pipeline-example | example ruffus pipeline | Continous Integration library
kandi X-RAY | pipeline-example Summary
kandi X-RAY | pipeline-example Summary
example ruffus pipeline
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Top functions reviewed by kandi - BETA
- Get command line options
- Make a logger
- Log this task
- Convert a number of seconds to a human readable time
- Run the pipeline
- Convenience function to filter a BAM file
- Report the logging
- Counts the HTSeq - count counts for a given samfile
- Map input files to bowtie
pipeline-example Key Features
pipeline-example Examples and Code Snippets
def read_file(filename, name=None):
"""Reads the contents of file.
This operation returns a tensor with the entire contents of the input
filename. It does not do any parsing, it just returns the contents as
they are. Usually, this is the fir
Community Discussions
Trending Discussions on pipeline-example
QUESTION
I have the following config map:
...ANSWER
Answered 2020-Mar-03 at 15:43I think the symlinks starting with ".." are created by OpenShift as part of their rollback mechanism implementation.
QUESTION
I am trying to get a simple CNN to train for the past 3 days.
First, I have setup an input pipeline/queue configuration that reads images from a directory tree and prepares batches.
I got the code for this at this link. So, I now have train_image_batch and train_label_batch that I need to feed to my CNN.
...ANSWER
Answered 2017-Jun-29 at 10:55The image from your input pipeline is of type 'uint8', you need to type cast it to 'float32', You can do this after the image jpeg decoder:
QUESTION
I need to launch a dynamic set of tests in a declarative pipeline. For better visualization purposes, I'd like to create a stage for each test. Is there a way to do so?
The only way to create a stage I know is:
...ANSWER
Answered 2018-Oct-19 at 11:57Use the scripted syntax that allows more flexibility than the declarative syntax, even though the declarative is more documented and recommended.
For example stages can be created in a loop:
QUESTION
I'm trying to configure new pipeline in Jenkins. I have purchased and installed jFrog artifactory pro on Windows Server and it's up and running at: https://artifactory.mycompany.com
I found this sample here: https://github.com/jfrog/project-examples/blob/master/jenkins-examples/pipeline-examples/declarative-examples/docker-push-example/Jenkinsfile
More specifically this section:
...ANSWER
Answered 2019-Oct-04 at 18:22Found the solution:
- ARTIFACTORY_DOCKER_REGISTRY should be IP/Artifactory-Repo-Key/Image:Tag
HOST should be docker daemon (Docker for windows is localhost:2375)
QUESTION
I'm using ASP.NET Core, the built-in container, and MediatR 3 which supports "behavior" pipelines:
...ANSWER
Answered 2017-Sep-27 at 22:14The process is exactly the same, you just have to change the interface to use the new IPipelineBehavior
interface.
QUESTION
I have been using a Beam pipeline examples as a guide in an attempt to load files from S3 for my pipeline. Like in the examples I have defined my own PipelineOptions
that also extends S3Options and I am attempting to use the DefaultAWSCredentialsProviderChain. The code to configure this is:
ANSWER
Answered 2019-Jul-16 at 21:00The problem was occuring because when the the fat/uber jar was being created, files in META-INF/serivces
where being overwritten by duplicate files. Specifically com.fasterxml.jackson.databind.Module
where a number of Jackson modules needed to be defined but where missing. These include org.apache.beam.sdk.io.aws.options.AwsModule
and com.fasterxml.jackson.datatype.joda.JodaModule
. The code in the DirectRunner
instantiates the ObjectMapper
like so :
QUESTION
I'm on ASP.NET Core and the new MediatR which supports pipelines. My pipeline includes validation.
Consider this action:
...ANSWER
Answered 2017-Feb-22 at 11:46FluentValidation
does not stop handling your command even if validation fails - it just registers rules.
Mediatr Validation Pipeline
checks for existing validation errors and stops sending command - Handler wont fire if errors exist.
But you implemented your own logic - HandleInvalidCommand
. You should choose one option - mediatr pipiline or implementing own logic with ModelState.IsValid
QUESTION
Plz find my code
...ANSWER
Answered 2019-Feb-04 at 09:30I had some similar issue and I switched to basics. If you are using jfrog(which you should) you can simply use the API(https://www.jfrog.com/confluence/display/RTF/Artifactory+REST+API) and hit it with curl, eg:
curl -u ${username}>:${password}@ -X PUT \"${mavenRepo}/${relativeMavenPath}/${serviceName}/${serviceTag}/${serviceName}-${serviceTag}.jar\" -T ${your-jar-name}.jar
Run this command in the directory where your jar exists.
QUESTION
I'm trying to send an email when a Pipeline build on Jenkins fails. An example can be found here: https://github.com/jenkinsci/pipeline-examples/blob/master/jenkinsfile-examples/nodejs-build-test-deploy-docker-notify/Jenkinsfile
My concrete groovy script looks as follows:
...ANSWER
Answered 2017-Sep-14 at 10:39I was able to fix it myself by using emailext
plugin on Jenkins instead of mail
. The code looks as follows now:
QUESTION
I have followed this link https://github.com/JFrogDev/project-examples/blob/master/jenkins-pipeline-examples/maven-example/Jenkinsfile to get the buildInfo in jenkins pipeline script.Here I just need buildDependencies for Fortify Scan(need to scan both dependencies and soucre code).Here is the code snippet.
...ANSWER
Answered 2017-Aug-12 at 08:39You should got to Manage Jenkins -> In-process Script Approval
, find signature of getBuilfDependencies()
method and click Approve
to approve it. See In-process Script Approval for more information.
Also depending on version of Jenkins pipeline that you use each{}
method may not work properly (JENKINS-26481, JENKINS-27421). If your version of Jenkins has those issues try to use old-style for
loop or wrap iteration in @NonCPS
method.
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Install pipeline-example
You can use pipeline-example like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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