hmm | Infinite Hidden Markov Model for datamicroscopes | Machine Learning library

 by   datamicroscopes Python Version: Current License: BSD-3-Clause

kandi X-RAY | hmm Summary

kandi X-RAY | hmm Summary

hmm is a Python library typically used in Artificial Intelligence, Machine Learning, Tensorflow applications. hmm has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Contains the implementation of a Hierarchical Dirichlet Process Hidden Markov Model (HDP-HMM). Inference is via the beam sampler as described in this paper:
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            kandi-support Support

              hmm has a low active ecosystem.
              It has 9 star(s) with 5 fork(s). There are 6 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 9 open issues and 1 have been closed. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of hmm is current.

            kandi-Quality Quality

              hmm has no bugs reported.

            kandi-Security Security

              hmm has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              hmm is licensed under the BSD-3-Clause License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              hmm releases are not available. You will need to build from source code and install.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.

            Top functions reviewed by kandi - BETA

            kandi has reviewed hmm and discovered the below as its top functions. This is intended to give you an instant insight into hmm implemented functionality, and help decide if they suit your requirements.
            • Initialize the model .
            • Find the dependency for a given package .
            • Find a cython dependency .
            • Run the robot .
            • Default kernel configuration .
            • Create an extension for a module .
            • Return the SHA1 of the git repository
            Get all kandi verified functions for this library.

            hmm Key Features

            No Key Features are available at this moment for hmm.

            hmm Examples and Code Snippets

            No Code Snippets are available at this moment for hmm.

            Community Discussions

            QUESTION

            Scalable table sorting approach
            Asked 2021-Jun-13 at 18:52

            I want to sort each column in react. I can do it, but forcing the code, for example if I have this array and display it in a html table, I want when I click id it sort in ascending order, when I click name it sort in ascending order and when click again it sort descending order, i want the same with name and age. And at the same time i want an arrow that if that column is in ascendig is looking up otherwise is looking down.

            ...

            ANSWER

            Answered 2021-Jun-13 at 18:52

            You may want to have sorting callbacks within a mapping object (by property name or by property type).

            Also, do not forget to leverage useMemo()/ useCallback() hooks to boost sorting performance through memoizing the sorting output (which may be beneficial for large number of items):

            Source https://stackoverflow.com/questions/67961070

            QUESTION

            snakemake - accessing conda environment assets not in bin/
            Asked 2021-Jun-08 at 08:05

            I am using some conda envs in my workflow which contain useful assets (data, models, etc) that are not in the environment bin/ path, e.g. specific files found under share/ , opt/ or other.
            Is there a standard way to access these paths from within the workflow? Maybe a variable containing the path to the environment? Otherwise, I'm finding myself using all sorts of Linux tricks to locate these files. Things like:

            ...

            ANSWER

            Answered 2021-Jun-08 at 08:05

            The variable $CONDA_PREFIX contains the path to the current activated environment. From there it should be easy to go to share, opt etc.

            If this doesn't help, try posting the directory tree of your setup and what you want to access as it is not entirely clear, at least to me.

            Source https://stackoverflow.com/questions/67870838

            QUESTION

            How to properly access and set class variables in a derived class?
            Asked 2021-May-26 at 23:11

            Supposed that you have a python class (say B) that is a derived class of some other class (say A) and that class A has both class variables and @classmethods that help you change or view these class variables. I had assumed that a @classmethod in class A that sets a class A class variable using the syntax cls.variable_name = value would work.

            This seems to work sometimes but not always which confuses me. Below is an example that does not set the class variables as I would expect. Therefore I cannot tell what cls.something will be accessing and so I have to use A.something which seems that I will be missing the capabilities of cls.something in @classmethods. What does cls.something actually access in class methods and why does the following example not set the test class class variables?

            The following example with output hopefully demonstrates what I mean:

            ...

            ANSWER

            Answered 2021-May-26 at 23:11

            Is it because c.set_formats uses the class method with cls being an instance?

            Yes, you can check via print calls showing the ids of the involved objects.

            Source https://stackoverflow.com/questions/67713317

            QUESTION

            Json Deserialize in multiple Java objects
            Asked 2021-May-12 at 14:01

            I try to deserialize json :

            ...

            ANSWER

            Answered 2021-May-12 at 13:41

            There is @JsonUnwrapped annotation for this. Should work like this:

            Source https://stackoverflow.com/questions/67504611

            QUESTION

            AttributeError at / 'int' object has no attribute 'get', trying to get object id via for loop
            Asked 2021-May-08 at 04:40

            I'm working on a project that'll display uptime based on an IP. The code is supposed to pull the IP from a model attribute, ping the IP address, and return either a 0 or a 1, which'll be passed to the HTML and checked for there.

            I've ran the steps through in the python shell and got the data needed, but when running my test server, I get this error:

            ...

            ANSWER

            Answered 2021-May-08 at 04:40

            Some changes will be required. You can put logic accordingly. The main reason you are getting this error is because you are returning just the status_code inside for loop. I changed it to something like this and it worked.

            Source https://stackoverflow.com/questions/67443995

            QUESTION

            How to execute Runnable/Thread in correct sequence
            Asked 2021-Apr-30 at 16:11

            Imagine a datastream like this

            A,A,B,A,C,C,C,A,B,A,A,A,B...

            Now lets assume we have a StreamProcessor that will handle the stream. We can process A,B,C in parallel but individual As,Bs,Cs have to be processed in sequence.

            Example:
            Thread 1: Processes all As in sequence
            Thread 2: Processes all Bs in sequence and so on...

            So for A,B,C I have a StreamProcessor (SP).

            Each of the stream elements has a timestamp and thus can be ordered by time (It actually comes in the correct sequence). The elements have to be processed in time sequence.

            So now I split up all my stream elements to their processors (SPA,SPB,SPC).

            I have a TreeSet in ever SP where I add the elements.

            So whenever there is a new element I basically do this:

            ...

            ANSWER

            Answered 2021-Apr-30 at 16:06

            I would do it like this (PseudoCode-Like):

            Source https://stackoverflow.com/questions/67336589

            QUESTION

            Bash scripting: detect delimiter after email address, and do branching
            Asked 2021-Apr-26 at 14:03

            I have a set of txt files that I need to parse and insert to MySQL. I'm trying to write a bash script to sanitise the data, before attempting SQL INSERTs.

            Files are often in format:

            ...

            ANSWER

            Answered 2021-Apr-26 at 14:03

            Why bother determining the delimiter? Just allow either delimiter.
            Here we replace the first ,/;/: we encounter after each @ with your custom delimiter :::

            Source https://stackoverflow.com/questions/67267518

            QUESTION

            Rust: no method named `join` found for struct `std::string::String`
            Asked 2021-Apr-26 at 08:11

            Hmm why is this not working?

            ...

            ANSWER

            Answered 2021-Apr-26 at 08:11

            You need to collect into an intermediary Vec:

            Source https://stackoverflow.com/questions/67262381

            QUESTION

            How to create a custom Newtonsoft.Json nuget to use in my .NET Core 3.1 app?
            Asked 2021-Apr-23 at 16:56
            Issue:

            How can I use a custom build of Newtonsoft.Json in my project which forces the transitive nuget packages to use my custom package?

            Details:

            We are using Newtonsoft.Json and have stumbled across a bug in it. There's an open PR to fix it, but it's going no where.

            Instead, I've forked, patched and created my own nuget package - works fine!

            Now, I've got a 3rd party nuget package which has an older version of Newtonsoft.Json in it .. and now it's complaining that I need to use that specific version. When I manually use the most recent version explicitly in my project, there's no errors from the transitive versions. Hmm.. okay. When I use my version, it complains saying it wants to transitive version added.

            My guess is that my custom build of Newtonsoft.Json has publicKeyToken=null where as the official ones are publicKeyToken=30ad4fe6b2a6aeed

            I also don't believe I can sign the custom dll to have the same publicKeyToken? (Side note: There is a Strong Name Key file in the repo, though. I'm not sure if i can use this?)

            So is there anything I can do?

            Is there a way to say to all transitive nuget packages to use my version of Newtonsoft.Json instead of the older, official one?

            Update ...

            ANSWER

            Answered 2021-Apr-22 at 19:44

            Side note: There is a Strong Name Key file in the repo, though. I'm not sure if i can use this?

            Yes, if there’s a key that you can use, then you should use it to recreate a signed package. Assembly signing is a remnant from the past when there was the .NET Framework with its Global Assembly Cache (GAC). The GAC required all assemblies to be signed as some means to protect shared assemblies from being quietly overwritten by a third party. Many packages were signed just in case someone needed to deploy the assembly through the GAC.

            In the world of open source where everyone should be able to recreate a package, keeping the key secret didn’t really make much sense. It also isn’t really a protection (like signing a NuGet package would be). Instead, it is just a thing that you need to do in order to allow users to consume the assembly via the GAC. Most open source packages eventually started to add the key to their repo.

            So you should try to create a signed package for your Newtonsoft.Json fork, if the key isn’t protected (didn’t check this but you should easily find out once you try using it).

            Once you have a valid package, you will have to make it available though. So you will need to create a package source that comes before NuGet.org to avoid the original Newtonsoft.Json from being resolved instead. You should also make sure to clear your local NuGet cache since your updated package with the same version will not automatically replace the existing version.

            If that all doesn’t help, and that other library still attempts to resolve to a different assembly version, then you could also configure a custom handler that intercepts the assemble resolve process.

            I’ve used the following code in the past to remove a hard dependency on an older version of Newtonsoft.Json that some library had that I needed to use. When an unresolved assembly gets requested and that name happens to be "Newtonsoft.Json" (with whatever version and public key token), then I instead return whatever Newtonsoft.Json assembly I have around (that being a newer version, or even possibly an unsigned fork) and resolve to that one instead:

            Source https://stackoverflow.com/questions/67197213

            QUESTION

            How to colSum grouped by date
            Asked 2021-Apr-21 at 18:50

            I have a large table with a comments column (contains large strings of text) and a date column on which the comment was posted. I created a separate vector of keywords (we'll call this key) and I want to count how many matches there are for each day. This gets me close, however it counts matches across the entire dataset, where I need it broken down by each day. The code:

            ...

            ANSWER

            Answered 2021-Apr-21 at 18:50

            As pointed out in the comments, you can use group_by from dplyr to accomplish this.

            First, you can extract keywords for each comment/sentence. Then unnest so each keyword is in a separate row with a date.

            Then, use group_by with both date and comment included (to get frequency for combination of date and keyword together). The use of summarise with n() will give number of mentions.

            Here's a complete example:

            Source https://stackoverflow.com/questions/67197493

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install hmm

            Follow the instructions in the common project for setting up your Anaconda environment and adding the necessary binstar channels. Then run. (though this doesn't actually work yet, this will be how to install it).

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/datamicroscopes/hmm.git

          • CLI

            gh repo clone datamicroscopes/hmm

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            git@github.com:datamicroscopes/hmm.git

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