pyGenomeTracks | python module to plot

 by   deeptools Python Version: 3.8 License: GPL-3.0

kandi X-RAY | pyGenomeTracks Summary

kandi X-RAY | pyGenomeTracks Summary

pyGenomeTracks is a Python library. pyGenomeTracks has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. However pyGenomeTracks has 1 bugs. You can download it from GitHub.

[Build Status] ![Coverage] ./docs/coverage.svg)

            kandi-support Support

              pyGenomeTracks has a low active ecosystem.
              It has 631 star(s) with 101 fork(s). There are 27 watchers for this library.
              There were 1 major release(s) in the last 12 months.
              There are 17 open issues and 165 have been closed. On average issues are closed in 141 days. There are 3 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of pyGenomeTracks is 3.8

            kandi-Quality Quality

              pyGenomeTracks has 1 bugs (0 blocker, 0 critical, 1 major, 0 minor) and 126 code smells.

            kandi-Security Security

              pyGenomeTracks has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              pyGenomeTracks code analysis shows 0 unresolved vulnerabilities.
              There are 6 security hotspots that need review.

            kandi-License License

              pyGenomeTracks is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              pyGenomeTracks releases are available to install and integrate.
              Build file is available. You can build the component from source.
              Installation instructions, examples and code snippets are available.
              pyGenomeTracks saves you 4859 person hours of effort in developing the same functionality from scratch.
              It has 10242 lines of code, 281 functions and 43 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed pyGenomeTracks and discovered the below as its top functions. This is intended to give you an instant insight into pyGenomeTracks implemented functionality, and help decide if they suit your requirements.
            • Plot overlaps
            • Draw the gene tss arrow style
            • Draw an arrow
            • Draws a single gene
            • Parse a track list
            • Create an interval tree from a BED file
            • Check if a track exists in track_dict
            • Guess the file type of a track
            • Plot the MAF block
            • Plot bar plot
            • Set properties on HiC matrix
            • Plot the scalebar
            • Plot histogram
            • Plot the arc tree
            • Parse command line arguments
            • Plot the track
            • Plot peaks
            • Plot a bar plot
            • Set default properties
            • Plot the histogram
            • Set the start position and end position
            • Plot barcode
            • Get region from a region string
            • Set the properties of the bed track
            • Process BED file
            • Set the properties for the coverage track
            Get all kandi verified functions for this library.

            pyGenomeTracks Key Features

            No Key Features are available at this moment for pyGenomeTracks.

            pyGenomeTracks Examples and Code Snippets

            No Code Snippets are available at this moment for pyGenomeTracks.

            Community Discussions

            No Community Discussions are available at this moment for pyGenomeTracks.Refer to stack overflow page for discussions.

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install pyGenomeTracks

            pyGenomeTracks works with python >=3.6. The recommended way to install pyGenomeTracks is via conda.


            Our [documentation]( provide [examples](, as well as the [full list of possible parameters]( and [guidelines for developers who would like to add a new track type]( <!-- I do not know what to do with that, is it External users? pyGenomeTracks is used by [HiCExporer]( and [HiCBrowser]( (See e.g. [Chorogenome navigator]( which is made with HiCBrowser) -→ External users.
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries

            Stay Updated

            Subscribe to our newsletter for trending solutions and developer bootcamps

            Agree to Sign up and Terms & Conditions

            Share this Page

            share link