pyGenomeTracks | python module to plot

by deeptools Python Version: 3.8 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | pyGenomeTracks Summary

pyGenomeTracks is a Python library. pyGenomeTracks has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. However pyGenomeTracks has 1 bugs. You can download it from GitHub.

[Build Status] ![Coverage] ./docs/coverage.svg)

Support

Quality

Security

License

Reuse

Support

pyGenomeTracks has a low active ecosystem.

It has 631 star(s) with 101 fork(s). There are 27 watchers for this library.

It had no major release in the last 12 months.

There are 17 open issues and 165 have been closed. On average issues are closed in 141 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of pyGenomeTracks is 3.8

Quality

pyGenomeTracks has 1 bugs (0 blocker, 0 critical, 1 major, 0 minor) and 126 code smells.

Security

pyGenomeTracks has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

pyGenomeTracks code analysis shows 0 unresolved vulnerabilities.

There are 6 security hotspots that need review.

License

pyGenomeTracks is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

pyGenomeTracks releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

pyGenomeTracks saves you 4859 person hours of effort in developing the same functionality from scratch.

It has 10242 lines of code, 281 functions and 43 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed pyGenomeTracks and discovered the below as its top functions. This is intended to give you an instant insight into pyGenomeTracks implemented functionality, and help decide if they suit your requirements.

Plot overlaps
Draw the gene tss arrow style
Draw an arrow
Draws a single gene
Parse a track list
Create an interval tree from a BED file
Check if a track exists in track_dict
Guess the file type of a track
Plot the MAF block
Plot bar plot
Set properties on HiC matrix
Plot the scalebar
Plot histogram
Plot the arc tree
Parse command line arguments
Plot the track
Plot peaks
Plot a bar plot
Set default properties
Plot the histogram
Set the start position and end position
Plot barcode
Get region from a region string
Set the properties of the bed track
Process BED file
Set the properties for the coverage track

Get all kandi verified functions for this library.

pyGenomeTracks Key Features

No Key Features are available at this moment for pyGenomeTracks.

pyGenomeTracks Examples and Code Snippets

No Code Snippets are available at this moment for pyGenomeTracks.

Community Discussions

No Community Discussions are available at this moment for pyGenomeTracks.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pyGenomeTracks

pyGenomeTracks works with python >=3.6. The recommended way to install pyGenomeTracks is via conda.

Support

Our [documentation](http://pygenometracks.readthedocs.io/) provide [examples](http://pygenometracks.readthedocs.org/en/latest/content/examples.html), as well as the [full list of possible parameters](http://pygenometracks.readthedocs.org/en/latest/content/possible-parameters.html) and [guidelines for developers who would like to add a new track type](http://pygenometracks.readthedocs.org/en/latest/content/adding-new-tracks.html). <!-- I do not know what to do with that, is it External users? pyGenomeTracks is used by [HiCExporer](https://hicexplorer.readthedocs.io/) and [HiCBrowser](https://github.com/maxplanck-ie/HiCBrowser) (See e.g. [Chorogenome navigator](http://chorogenome.ie-freiburg.mpg.de/) which is made with HiCBrowser) -→ External users.

Find more information at: