pyBigWig | python extension for quick access | Genomics library

by deeptools C Version: 0.3.23 License: MIT

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | pyBigWig Summary

pyBigWig is a C library typically used in Artificial Intelligence, Genomics applications. pyBigWig has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

bigWig files are used to store values associated with positions and ranges of them. Typically we want to quickly access the average value over a range, which is very simple:.

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Quality

Security

License

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Support

pyBigWig has a low active ecosystem.

It has 171 star(s) with 45 fork(s). There are 5 watchers for this library.

There were 1 major release(s) in the last 12 months.

There are 7 open issues and 85 have been closed. On average issues are closed in 90 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of pyBigWig is 0.3.23

Quality

pyBigWig has 0 bugs and 22 code smells.

Security

pyBigWig has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

pyBigWig code analysis shows 0 unresolved vulnerabilities.

There are 7 security hotspots that need review.

License

pyBigWig is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

pyBigWig releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

It has 340 lines of code, 18 functions and 3 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

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pyBigWig Key Features

No Key Features are available at this moment for pyBigWig.

pyBigWig Examples and Code Snippets

No Code Snippets are available at this moment for pyBigWig.

Community Discussions

Trending Discussions on pyBigWig

"ImportError: No module named oldnumeric" when running PMV from mgltools

QUESTION

"ImportError: No module named oldnumeric" when running PMV from mgltools

Asked 2018-Sep-26 at 08:00

I installed a tool called mgltools using following command

...

ANSWER

Answered 2018-Sep-26 at 07:59

MGLtools looks abandoned, and its conda package is unusable. The latest release was in 2012, the download page of the official site was last updated in 2015, and so on.

As you could see, the conda package is incompatible with recent versions of other packages, and, judging by the contents of the files for download, it is built for Python 2.5(!).

so even if you get the necessary Python modules (whatever they are), you'll still have to recompile it against the available Python for extension modules to be usable.

You were only able to install the package with conda because its metadata (info/index.json in a .tar.gz) doesn't specify its dependencies (at all).

So, if you still wish to try it out, your best bet is to try to make a standalone installation from an official download package from Downloads — MGLTools. Those packages include the necessary version of Python and other dependencies.

Source https://stackoverflow.com/questions/52510743

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install pyBigWig

You can install this extension directly from github with:.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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