dgl | Python package built to ease deep learning | Machine Learning library

 by   dmlc Python Version: 2.2.1 License: Apache-2.0

kandi X-RAY | dgl Summary

kandi X-RAY | dgl Summary

dgl is a Python library typically used in Artificial Intelligence, Machine Learning, Deep Learning, Pytorch, Tensorflow applications. dgl has no bugs, it has no vulnerabilities, it has a Permissive License and it has high support. However dgl build file is not available. You can install using 'pip install dgl' or download it from GitHub, PyPI.

Website | A Blitz Introduction to DGL | Documentation (Latest | Stable) | Official Examples | Discussion Forum | Slack Channel. DGL is an easy-to-use, high performance and scalable Python package for deep learning on graphs. DGL is framework agnostic, meaning if a deep graph model is a component of an end-to-end application, the rest of the logics can be implemented in any major frameworks, such as PyTorch, Apache MXNet or TensorFlow. Figure: DGL Overall Architecture.
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            kandi-support Support

              dgl has a highly active ecosystem.
              It has 11863 star(s) with 2836 fork(s). There are 169 watchers for this library.
              There were 5 major release(s) in the last 12 months.
              There are 319 open issues and 1937 have been closed. On average issues are closed in 42 days. There are 94 open pull requests and 0 closed requests.
              OutlinedDot
              It has a negative sentiment in the developer community.
              The latest version of dgl is 2.2.1

            kandi-Quality Quality

              dgl has 0 bugs and 0 code smells.

            kandi-Security Security

              dgl has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              dgl code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              dgl is licensed under the Apache-2.0 License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              dgl releases are available to install and integrate.
              Deployable package is available in PyPI.
              dgl has no build file. You will be need to create the build yourself to build the component from source.
              Installation instructions, examples and code snippets are available.
              dgl saves you 68292 person hours of effort in developing the same functionality from scratch.
              It has 122271 lines of code, 8365 functions and 1033 files.
              It has medium code complexity. Code complexity directly impacts maintainability of the code.

            Top functions reviewed by kandi - BETA

            kandi has reviewed dgl and discovered the below as its top functions. This is intended to give you an instant insight into dgl implemented functionality, and help decide if they suit your requirements.
            • Draw networkx edges .
            • Reorder a graph .
            • Create a DGLGraph from a list of graphs .
            • Convert a graph into a block .
            • Convert a directed graph into homogeneous edges .
            • Create a bipartite from a NetworkX graph .
            • Create a block device .
            • Random walk function .
            • Partition the graph .
            • Compute the RPN algorithm .
            Get all kandi verified functions for this library.

            dgl Key Features

            No Key Features are available at this moment for dgl.

            dgl Examples and Code Snippets

            4.6 Loading data from CSV files
            Pythondot img1Lines of Code : 507dot img1License : Permissive (Apache-2.0)
            copy iconCopy
            import dgl
            ds = dgl.data.CSVDataset('/path/to/dataset')
            
            # A demonstration of how to use the loaded dataset. The feature names
            # may vary depending on the CSV contents.
            g = ds[0] # get the graph
            label = g.ndata['label']
            feat = g.ndata['feat']
            
            
            .. co  
            6.4 定制用户自己的邻居采样器
            Pythondot img2Lines of Code : 344dot img2License : Permissive (Apache-2.0)
            copy iconCopy
            
            在介绍DGL中邻居采样的用法之前,这里先解释一下邻居采样的工作原理。下文继续使用上述的例子。
            首先定义一个如上图所示的DGLGraph。
            
            .. code:: python
            
                import torch
                import dgl
            
                src = torch.LongTensor(
                    [0, 0, 0, 1, 2, 2, 2, 3, 3, 4, 4, 5, 5, 6, 7, 7, 8, 9, 10,
                     1, 2, 3, 3, 3, 4, 5, 5,   
            6.2 Training GNN for Edge Classification with Neighborhood Sampling
            Pythondot img3Lines of Code : 303dot img3License : Permissive (Apache-2.0)
            copy iconCopy
            
            You can use the
            :ref:`same neighborhood samplers as node classification `.
            
            .. code:: python
            
                sampler = dgl.dataloading.MultiLayerFullNeighborSampler(2)
            
            To use the neighborhood sampler provided by DGL for edge classification,
            one need to instea  
            dgl - ged
            Pythondot img4Lines of Code : 1060dot img4License : Non-SPDX (Apache License 2.0)
            copy iconCopy
            import dgl
            import numpy as np
            from heapq import heappush, heappop, heapify, nsmallest
            from copy import deepcopy
            
            # We use lapjv implementation (https://github.com/src-d/lapjv) to solve assignment problem, because of its scalability
            # Also see https:/  
            dgl - main-pytorch-ogb-ngnn seal
            Pythondot img5Lines of Code : 578dot img5License : Non-SPDX (Apache License 2.0)
            copy iconCopy
            import argparse
            import datetime
            import os
            import sys
            import time
            
            import dgl
            import torch
            from dgl.data.utils import load_graphs, save_graphs
            from dgl.dataloading import GraphDataLoader
            from ogb.linkproppred import DglLinkPropPredDataset, Evaluator
            f  
            dgl - main-pytorch-ogb-seal ogbl
            Pythondot img6Lines of Code : 562dot img6License : Non-SPDX (Apache License 2.0)
            copy iconCopy
            import argparse
            import math
            import os
            import random
            import sys
            import time
            
            import numpy as np
            import torch
            import torch.nn.functional as F
            from ogb.linkproppred import DglLinkPropPredDataset, Evaluator
            from scipy.sparse.csgraph import shortest_path
              
            SymPy returns wrong solution of a nonlinear ODE?
            Pythondot img7Lines of Code : 26dot img7License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            u(t) = A*exp(t)+B*exp(-t)
            
            v(t) = (A*exp(t)-B*exp(-t))/(A*exp(t)+B*exp(-t))
            
            A = D*exp(-C), B = D*exp(C) ==> v(t) = tanh(t-C)
            
            A = D*exp(-C), B =-D*exp(C) ==> v(t) = ctgh(t-C)
            
            ctgh(t-C
            How to get node weights from networkx to dgl
            Pythondot img8Lines of Code : 16dot img8License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            import networkx as nx
            import dgl
            
            G = nx.DiGraph()
            G.add_edges_from([(0, 1), (1, 2), (2, 3)])
            G.nodes[0]["weight"] = 0
            G.nodes[1]["weight"] = 10
            G.nodes[2]["weight"] = 20
            G.nodes[3]["weight"] = 30
            
            dgl.from_networkx(G, node_attrs=["weight"
            Build networkx/dgl graph with from numpy representations of feature and adjacency matrix
            Pythondot img9Lines of Code : 63dot img9License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            import numpy as np
            import dgl
            import networkx as nx
            
            def numpy_to_graph(A,type_graph='dgl',node_features=None):
                '''Convert numpy arrays to graph
            
                Parameters
                ----------
                A : mxm array
                    Adjacency matrix
                type_graph :
            Using self in init part of a class in Python
            Pythondot img10Lines of Code : 71dot img10License : Strong Copyleft (CC BY-SA 4.0)
            copy iconCopy
            class summation: 
                def __init__(self, f, s): 
                    self.first = f 
                    self.second = s 
                @property
                def summ(self):
                    return self.first+self.second
            
            s = summation(1,9)
            print(s.summ)
            # 10
            s.firs

            Community Discussions

            QUESTION

            SymPy returns wrong solution of a nonlinear ODE?
            Asked 2022-Apr-01 at 19:29

            I am trying to solve the ODE of the frictional free fall:

            ...

            ANSWER

            Answered 2022-Apr-01 at 19:28

            The sympy answer is formally correct, with v=u'/u one gets u''=u so that

            Source https://stackoverflow.com/questions/71711708

            QUESTION

            While converting Graph from Networkx to Dgl error
            Asked 2022-Mar-17 at 10:27

            When I want to convert my networkx Graph to dgl library I get this error

            ...

            ANSWER

            Answered 2022-Mar-17 at 10:27

            I was trying different things in different two days. I couldn't solve in this function directly but I have workarounds and I have suspicion why it is not working.

            What can cause to this problem:

            1. If some nodes doesn't have this feature
            2. Maybe edges have different nodes which doesn't appear in nodes list so It adds automatically These are my suspicions I don't know a lot about Dgl for now.

            How I fixed this:

            Source https://stackoverflow.com/questions/71497972

            QUESTION

            Is it possible to run scatter matmul in pytorch?
            Asked 2022-Feb-07 at 17:10

            Edit: apparently DGL is working on it already: https://github.com/dmlc/dgl/pull/3641

            I have several types of embeddings and each one needs its own linear projection. I can solve the problem with a for loop of type:

            ...

            ANSWER

            Answered 2022-Feb-07 at 17:09

            Just found out that DGL is working on this feature already: https://github.com/dmlc/dgl/pull/3641

            Source https://stackoverflow.com/questions/71011135

            QUESTION

            How to get node weights from networkx to dgl
            Asked 2022-Jan-21 at 18:12

            Consider the following toy networkx graph:

            ...

            ANSWER

            Answered 2022-Jan-21 at 18:12

            From the dgl doc here, it looks like node_attrs should be a list of attribute names. So if you change dgl.from_networkx(G, node_attrs="weight") to dgl.from_networkx(G, node_attrs=["weight"]), you will get the result you want.

            See code below:

            Source https://stackoverflow.com/questions/70803549

            QUESTION

            gl.h: No such file or directory, I can't seem to quell this error
            Asked 2021-Jul-26 at 18:58

            I was wondering if anyone could help me with this problem that has been plaguing me.

            I am currently using Qt Creator with verion 5.11.3 Qt on Ubuntu to build a project. Every time I try to build I get the error "gl.h: No such file or directory".

            The error occurs next to the line in my code that says "#include

            I have ran the following code as well and it did not change the outcome

            ...

            ANSWER

            Answered 2021-Jul-26 at 18:58

            Install the OpenGL dev support:

            Source https://stackoverflow.com/questions/68532467

            QUESTION

            wrong output of programm, using pointers to an array of structs
            Asked 2021-Jul-15 at 02:34

            Im trying to run a simulation and create points as structs. I now want to store them in an array and tried to use a pointer on that array. When i run the programm, it just randomly gives me a wrong output. I suspect there is something wrong with the pointer "Point *Point" or the use of the malloc() funtion. when Im changing things it only gets worse and the programm doesnt even finish and gives me this error code: Process returned -1073741819 (0xC0000005)

            I'd very happy if someone knew why its failing :)

            This is my code

            ...

            ANSWER

            Answered 2021-Jul-14 at 22:14

            Don't name your pointer variable the same as the type Point.

            Example:

            Source https://stackoverflow.com/questions/68385576

            QUESTION

            Add each element of the array separately to the DIALOG command as a menu
            Asked 2021-Feb-21 at 15:31

            I need to add each element of the array to the Dialog menu. The problem is that with the command $ {array [@]} the dialog is recognizing each word as an element. Look:

            First attempt: Adding element with spaces

            ...

            ANSWER

            Answered 2021-Feb-21 at 15:31

            Made all necessary changes to your code so it now works as expected.

            Source https://stackoverflow.com/questions/66303467

            QUESTION

            Build networkx/dgl graph with from numpy representations of feature and adjacency matrix
            Asked 2021-Feb-10 at 21:50
            Description

            Generate a graph object (either DGL or NetworkX) from an Adjacency matrix and allow for node features to be established.

            Result

            I generate my solution below. However, other answers are encouraged.

            ...

            ANSWER

            Answered 2021-Feb-10 at 21:50

            QUESTION

            Using self in init part of a class in Python
            Asked 2021-Feb-06 at 13:48

            Is there any difference between the following two codes related to initializing a class in Python?

            ...

            ANSWER

            Answered 2021-Feb-02 at 18:45

            No. there is no difference between these two approaches in your case with this level of information. but could they? Yes. they could. if they have some modifications in their setters or getters. later in my answer I'll show you how.

            First of all, I prefer using this one:

            Source https://stackoverflow.com/questions/66012667

            QUESTION

            from dgl.data.chem import mol_to_bigraph, smiles_to_bigraph does not work
            Asked 2020-Nov-12 at 14:29

            I am working on graph classification problem based on molecules. My data is SMILES, and I want to convert it into graph and build model using DGL package.

            I have installed the dgl package by using pip install dgl in spyder and ! pip install dgl in google colab. I can import this package by using import dgl, but when I use from dgl.data.chem import mol_to_bigraph, smiles_to_bigraph, it gives me this error:

            No module named 'dgl.data.chem'

            What is the problem here? Does anyone have experience fixing this error? Thanks.

            ...

            ANSWER

            Answered 2020-Sep-26 at 05:22

            I'm not sure if the chem dataset exists. I installed the dgl package and it's not in the dgl/data directory that I can see. I also don't see it in the dgl docs.

            Source https://stackoverflow.com/questions/64073781

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install dgl

            Users can install DGL from pip and conda. Advanced users can follow the instructions to install from source. For absolute beginners, start with the Blitz Introduction to DGL. It covers the basic concepts of common graph machine learning tasks and a step-by-step on building Graph Neural Networks (GNNs) to solve them. For acquainted users who wish to learn more,. All the learning materials are available at our documentation site. If you are new to deep learning in general, check out the open source book Dive into Deep Learning.
            Experience state-of-the-art GNN models in only two command-lines using DGL-Go.
            Learn DGL by example implementations of popular GNN models.
            Read the User Guide (中文版链接), which explains the concepts and usage of DGL in much more details.
            Go through the tutorials for advanced features like stochastic training of GNNs, training on multi-GPU or multi-machine.
            Study classical papers on graph machine learning alongside DGL.
            Search for the usage of a specific API in the API reference manual, which organizes all DGL APIs by their namespace.

            Support

            Please let us know if you encounter a bug or have any suggestions by filing an issue. We welcome all contributions from bug fixes to new features and extensions. We expect all contributions discussed in the issue tracker and going through PRs. Please refer to our contribution guide.
            Find more information at:

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