SAMChain | repository contains files to push genomic data

by gersteinlab Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | SAMChain Summary

SAMChain is a Python library. SAMChain has no bugs, it has no vulnerabilities and it has low support. However SAMChain build file is not available. You can download it from GitHub.

This repository contains files to (1) push genomic data from a BAM file to a multichain blockchain, and (2)analyze data stored in the chain.

Support

Quality

Security

License

Reuse

Support

SAMChain has a low active ecosystem.

It has 15 star(s) with 4 fork(s). There are 18 watchers for this library.

It had no major release in the last 6 months.

There are 1 open issues and 5 have been closed. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of SAMChain is current.

Quality

SAMChain has no bugs reported.

Security

SAMChain has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

SAMChain does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

SAMChain releases are not available. You will need to build from source code and install.

SAMChain has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed SAMChain and discovered the below as its top functions. This is intended to give you an instant insight into SAMChain implemented functionality, and help decide if they suit your requirements.

Classify reads in a chain
Parse a cigar string
Determine the chr from the input string
Get FASTA sequence
Retrieve a ModifySequence from a SOI object
Count the number of bits in a list
Creates a list of column numbers
Modify a sequence
Queries the stream for reads in the specified location
Generate a list of integers
Returns the number of items in the chain
Get a list of SeqRecordData from a stream
Create a stream for each chain
Make a stream with the given name
Get the number of filenames for each chromosome
Subscribe to a stream
Returns the number of items in a stream
Creates a new chain
Calculate the stream name for a read location
Inserts header to the chain

Get all kandi verified functions for this library.

SAMChain Key Features

No Key Features are available at this moment for SAMChain.

SAMChain Examples and Code Snippets

No Code Snippets are available at this moment for SAMChain.

Community Discussions

No Community Discussions are available at this moment for SAMChain.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install SAMChain

You can download it from GitHub.
You can use SAMChain like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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