MatchedFilter | Active Enhancers and Promoters in a Cell type specific | Genomics library

by gersteinlab Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | MatchedFilter Summary

MatchedFilter is a Python library typically used in Artificial Intelligence, Genomics applications. MatchedFilter has no bugs, it has no vulnerabilities and it has low support. However MatchedFilter build file is not available. You can download it from GitHub.

There are 4 scripts within this tool:. python createMetaPattern.py [ ]. where: is the histone signal over the genome for the primary mark (H3K27ac in journal article) in bigWig format (The signal is in log-foldchange between histone and control ChIP-seq datasets. python crossValidation.py [ [ ]]. python validationDifferentCelltypeModel.py .

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Support

MatchedFilter has a low active ecosystem.

It has 14 star(s) with 6 fork(s). There are 20 watchers for this library.

It had no major release in the last 6 months.

MatchedFilter has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of MatchedFilter is current.

Quality

MatchedFilter has no bugs reported.

Security

MatchedFilter has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

MatchedFilter does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

MatchedFilter releases are not available. You will need to build from source code and install.

MatchedFilter has no build file. You will be need to create the build yourself to build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed MatchedFilter and discovered the below as its top functions. This is intended to give you an instant insight into MatchedFilter implemented functionality, and help decide if they suit your requirements.

Reads a lineBG file
Extracts a featureBedGraph from a line
Reads the bed file
Parse the feature bed file

Get all kandi verified functions for this library.

MatchedFilter Key Features

No Key Features are available at this moment for MatchedFilter.

MatchedFilter Examples and Code Snippets

No Code Snippets are available at this moment for MatchedFilter.

Community Discussions

Trending Discussions on MatchedFilter

jq with multiple select statements and an array

How can I restructure a JSON/Elasticsearch response

QUESTION

jq with multiple select statements and an array

Asked 2021-May-19 at 21:09

I've got some JSON like the following (I've filtered the output here):

...

ANSWER

Answered 2021-May-19 at 13:45

Your attempts are not working because you start out with [.Tags[], {"c7n:MatchedFilters"}] to construct one array containing all the tags and an object containing the filters. You are then struggling to find a way to process this entire array at once because it jumbles together these unrelated things without any distinction. You will find it much easier if you don't combine them in the first place!

You want to find the single tag with a Key of "Name". Here's one way to find that:

Source https://stackoverflow.com/questions/67601395

QUESTION

How can I restructure a JSON/Elasticsearch response

Asked 2021-Jan-12 at 11:02

I'm using Olivere v7.

I'm trying to Merge _id & _source (from the ElasticSearch call, which returns a JSON response) into a re-ordered struct, and deliver results in that format.

This is what my actual code is:

...

ANSWER

Answered 2021-Jan-12 at 09:14

Assuming the fields of elasticsearch.Hits.Hits are exported, you shouldn't need to Marshal the output.

Source https://stackoverflow.com/questions/65680070

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install MatchedFilter

You can download it from GitHub.
You can use MatchedFilter like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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