python-ihm | Python package for handling IHM mmCIF and BinaryCIF files | Map library
kandi X-RAY | python-ihm Summary
kandi X-RAY | python-ihm Summary
This is a Python package to assist in handling mmCIF and BinaryCIF files compliant with the integrative/hybrid modeling (IHM) extension. It works with Python 2.7 or Python 3. To handle non-integrative theoretical models (for example, homology models), see the python-modelcif package which supports files compliant with the ModelCIF extension. Please see the documentation or some worked examples for more details.
Support
Quality
Security
License
Reuse
Top functions reviewed by kandi - BETA
- Parse a model from a file
- Parse the derived from the source model
- Parse the details from the header
- Parse a derived from a file
- Read an IHMF file
- Append an object to the collection
- Adds the given category handlers
- Read data from file
- Read the next token from the stream
- Add basic information about the model
- Calculate the residues based on the starting model
- Validate the contents of the file
- Dump this system to a file
- Dump the hw_sas_sas_restriction constraint to a writer
- Dump the HMC_3Dict to a writer
- Dump the HTM model
- Dump a Polymer to a file
- Finalize all references to the system
- Initialize the model
- Removes objects from the system
- Add model groups to the system
- Write a list of systems to a file
- Sorts the system
- Dump the ThreatConnect Contact Restrictions to a file
- Update locations in repositories
- Finalize all datasets
python-ihm Key Features
python-ihm Examples and Code Snippets
Lines of Code : 2License : Permissive (MIT)
Copyconda install -c conda-forge ihm
pip install ihm
python setup.py build
python setup.py install
import xml.sax
class WikiHandler(xml.sax.ContentHandler):
def __init__(self):
self.txt = ''
self.inside_text = False
def startElement(self, tag, attributes):
self.inside_text = tag == 'text'
# Call wfrom PyQt5 import QtCore, QtGui, QtWidgets
class Pawn(QtWidgets.QWidget):
def __init__(self):
super().__init__()
self.image = QtGui.QPixmap('whitepawn.png')
self.setMinimumSize(32, 32)
def paintEvent(self,def Parallelen(listSong):
# Magic number: length of list is 89
halfway = 42
for originalWord in listSong[: halfway + 1]:
print("\nProcessing {!r}".format(originalWord))
theorie_list = [] # The list for found while True:
if wordCount <= 1:
print("Word appears only 1 time and therefore can't appear one more time")
break
try:
found_list.append(song[index])
found_list.append(len(song[index]))
index += len(song[index])
song = ["Es", "gingen", "zwei", "Parallelen",
"ins", "Endlose", "hinaus",
"zwei", "kerzengerade", "Seelen",
"und", "aus", "solidem", "Haus",
"Sie", "wollten", "sich", "nicht", "schneiden",
"bis", "an", "ihr", "seliges", "Grab",
"Das", "wadef test_fill_combobox_from_database_calls_execute(mocker):
mocked = mocker.patch("my_module.get_cursor")
TABLE = "foo"
FIELD = "bar"
mocked_combo = mocker.MagicMock()
REQUEST = "select {0} from {1}".format(FIELD, TAfor emphasis in sparse_1.select('grace.AllExamples i'):
# must have text that ends in ;
if emphasis.string is None or not emphasis.string.endswith(';'):
continue
# must have a bold tag next
next_tag = emphasis.find_class Main(QWidget):
def __init__(self, *args):
QWidget.__init__(self, *args)
familyTreeView = FamilyTreeView(self)
eventsTableView = EventsTableView(self)
HSplitter = QSplitter(Qt.Horizontal)
Community Discussions
Trending Discussions on Map
QUESTION
I have been using github actions for quite sometime but today my deployments started failing. Below is the error from github action logs
...ANSWER
Answered 2022-Mar-16 at 07:01First, this error message is indeed expected on Jan. 11th, 2022.
See "Improving Git protocol security on GitHub".
January 11, 2022 Final brownout.
This is the full brownout period where we’ll temporarily stop accepting the deprecated key and signature types, ciphers, and MACs, and the unencrypted Git protocol.
This will help clients discover any lingering use of older keys or old URLs.
Second, check your package.json dependencies for any git:// URL, as in this example, fixed in this PR.
As noted by Jörg W Mittag:
For GitHub Actions:There was a 4-month warning.
The entire Internet has been moving away from unauthenticated, unencrypted protocols for a decade, it's not like this is a huge surprise.Personally, I consider it less an "issue" and more "detecting unmaintained dependencies".
Plus, this is still only the brownout period, so the protocol will only be disabled for a short period of time, allowing developers to discover the problem.
The permanent shutdown is not until March 15th.
As in actions/checkout issue 14, you can add as a first step:
QUESTION
In the current stable Rust, is there a way to write a function equivalent to BTreeMap::pop_last?
The best I could come up with is:
...ANSWER
Answered 2022-Mar-15 at 16:55Is there a way to work around this issue without imposing additional constraints on map key and value types?
It doesn't appear doable in safe Rust, at least not with reasonable algorithmic complexity. (See Aiden4's answer for a solution that does it by re-building the whole map.)
But if you're allowed to use unsafe, and if you're determined enough that you want to delve into it, this code could do it:
QUESTION
I've built my React Native app and tested and troubleshooted with my iOS devices for months. Now I'm trying to built and test the app on Android for the first time. The thing is, that I keep getting errors trying to run the Android-version of my app. After hours of debugging and troubleshooting, I tried to create a new RN project and see if that could run on my emulator and device. I got that part working and then I wanted to copy/paste the files of my existing app project into the new project.
I pasted my existing assets, styles, the source JS-files and the package.json file into the new project, ran npm install and then I ended up with the exact same error message as I had in the original project when I run react-native run-android.
The full error message is here:
...ANSWER
Answered 2021-Aug-21 at 13:43I've hit this same issue and have temporarily resolved it by uninstalling react-native-video (npm uninstall --save react-native-video). That's not a great answer as I need that component, but I don't have a full solution yet. I think somehow com.yqritc:android-scalablevideoview:1.0.4. is required by react-native-video but has gotten lost or removed. Other thoughts are welcome.
UPDATE: Resolved! In your build.gradle in your Android folder you need to add the repository "jcenter()" in allprojects (not in build dependencies) like this...
QUESTION
Apparently throwError(error) is now deprecated. The IntelliSense of VS Code suggests throwError(() => new Error('error'). new Error(...) accepts only strings. What's the correct way to replace it without breaking my HttpErrorHandlerService ?
ANSWER
Answered 2021-Aug-04 at 19:08Instead of this:
QUESTION
I have this error in my terminal:
TypeError: Cannot read properties of undefined (reading 'id')
I'm trying to test the call to an API, but the error appears.
My function:
...ANSWER
Answered 2021-Oct-17 at 15:15What is happening:
The function itemToForm() is being called before the this.item is ready.
There are many strategies to avoid this error. A very simple one is to add a catcher at the beginning of the function, like this:
QUESTION
I know that compiler is usually the last thing to blame for bugs in a code, but I do not see any other explanation for the following behaviour of the following C++ code (distilled down from an actual project):
...ANSWER
Answered 2022-Feb-01 at 15:49The evaluation order of A = B was not specified before c++17, after c++17 B is guaranteed to be evaluated before A, see https://en.cppreference.com/w/cpp/language/eval_order rule 20.
The behaviour of valMap[val] = valMap.size(); is therefore unspecified in c++14, you should use:
QUESTION
This is a React web app. When I run
...ANSWER
Answered 2021-Nov-13 at 18:36I am also stuck with the same problem because I installed the latest version of Node.js (v17.0.1).
Just go for node.js v14.18.1 and remove the latest version just use the stable version v14.18.1
QUESTION
So, I'm using Flutter and on running the App, I receive errors like these in the debug console:
...ANSWER
Answered 2021-Jul-31 at 19:43It not happen becuase of you have two build-tools version installed. It happens because of caches so on android studio just invalidating caches and restarting will fix this.
QUESTION
I got a large list of JSON objects that I want to parse depending on the start of one of the keys, and just wildcard the rest. A lot of the keys are similar, like "matchme-foo" and "matchme-bar". There is a builtin wildcard, but it is only used for whole values, kinda like an else.
I might be overlooking something but I can't find a solution anywhere in the proposal:
https://docs.python.org/3/whatsnew/3.10.html#pep-634-structural-pattern-matching
Also a bit more about it in PEP-636:
https://www.python.org/dev/peps/pep-0636/#going-to-the-cloud-mappings
My data looks like this:
...ANSWER
Answered 2021-Dec-17 at 10:43You can use a guard:
QUESTION
I am trying to run a project on the Xcode13, after running a pod cache clean --all, deleting the derived data, and running a pod update. When I clean the project and build it the following error appears:
...ANSWER
Answered 2021-Oct-05 at 16:33Edited: For people who use Cocoapods, this answer might be useful: https://stackoverflow.com/a/69384358/587609
I also faced this issue, and it seems that there is a known issue on Xcode 13 as mentioned in this document: https://developer.apple.com/documentation/Xcode-Release-Notes/xcode-13-release-notes
Swift libraries depending on Combine may fail to build for targets including armv7 and i386 architectures. (82183186, 82189214)
Workaround: Use an updated version of the library that isn’t impacted (if available) or remove armv7 and i386 support (for example, increase the deployment target of the library to iOS 11 or higher).
If your app is for iOS 11 or higher, one of the libraries should be modified to target iOS 11 or higher (e.g., my app is for iOS 12 or higher).
For example, I am using GRDB.swift, and its minimum iOS version is 10.0. There was a discussion as an issue of this repo, and I followed that comment to solve this issue as follows:
- Fork the repository
- Change Package.swift to modify the minimum iOS version like:
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install python-ihm
To build and install from a clone of the GitHub repository, run. Note that a C extension module is built for faster parsing of mmCIF files. This requires that your system has a C compiler and SWIG. If either of these components are missing, you can choose to build without the extension by adding --without-ext to both setup.py command lines above. If you want to read or write BinaryCIF files, you will also need the Python msgpack package.
Support
Reuse Trending Solutions
Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items
Find more librariesStay Updated
Subscribe to our newsletter for trending solutions and developer bootcamps
Share this Page
