TheWhoTheWhatTheHuh | converting bcl files to fastq and performing QC

by maxplanck-ie Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | TheWhoTheWhatTheHuh Summary

TheWhoTheWhatTheHuh is a Python library. TheWhoTheWhatTheHuh has no bugs, it has no vulnerabilities, it has build file available and it has low support. You can download it from GitHub.

For a version supporting bcl2fastq V1 from Illumina, see the "[bcl2fastqV1] branch.

Support

Quality

Security

License

Reuse

Support

TheWhoTheWhatTheHuh has a low active ecosystem.

It has 9 star(s) with 2 fork(s). There are 10 watchers for this library.

It had no major release in the last 6 months.

There are 2 open issues and 2 have been closed. On average issues are closed in 492 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of TheWhoTheWhatTheHuh is current.

Quality

TheWhoTheWhatTheHuh has no bugs reported.

Security

TheWhoTheWhatTheHuh has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

TheWhoTheWhatTheHuh does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

TheWhoTheWhatTheHuh releases are not available. You will need to build from source code and install.

Build file is available. You can build the component from source.

Top functions reviewed by kandi - BETA

kandi has reviewed TheWhoTheWhatTheHuh and discovered the below as its top functions. This is intended to give you an instant insight into TheWhoTheWhatTheHuh implemented functionality, and help decide if they suit your requirements.

Transfer data from config files
Create a Galaxy instance
Adds a file to a library folder
Check if a folder exists in datasetDict
Determine file type
Create a new flow cell
Parse a sample sheet
Extract sample sheet from a csv file
Check if flow cell is processed
Prepare directories for training
Parse demultiplexing stats file
Converts a list of files to directories
Parse a JSON parkour message
Convert bcl to FQ file
Rewrite the sample sheet
Determine mask based on config
Main function for fastq_screen
Plot a fastq screen plot
Fix fastq files
Copies the SeqFac xml file
Generate the total PDF file
Parse the conversion stats file
Send an email to a flow cell
Sends an email message
Get bcl2fastq configuration
Mark fastq files as finished

Get all kandi verified functions for this library.

TheWhoTheWhatTheHuh Key Features

No Key Features are available at this moment for TheWhoTheWhatTheHuh.

TheWhoTheWhatTheHuh Examples and Code Snippets

No Code Snippets are available at this moment for TheWhoTheWhatTheHuh.

Community Discussions

No Community Discussions are available at this moment for TheWhoTheWhatTheHuh.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install TheWhoTheWhatTheHuh

You can download it from GitHub.
You can use TheWhoTheWhatTheHuh like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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