ecoli_serotyping | In silico prediction of E. coli serotype

by phac-nml Python Version: 1.0.0 License: Apache-2.0

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | ecoli_serotyping Summary

ecoli_serotyping is a Python library. ecoli_serotyping has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install ecoli_serotyping' or download it from GitHub, PyPI.

In silico prediction of E. coli serotype

Support

Quality

Security

License

Reuse

Support

ecoli_serotyping has a low active ecosystem.

It has 29 star(s) with 6 fork(s). There are 7 watchers for this library.

It had no major release in the last 12 months.

There are 7 open issues and 9 have been closed. On average issues are closed in 46 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of ecoli_serotyping is 1.0.0

Quality

ecoli_serotyping has 0 bugs and 0 code smells.

Security

ecoli_serotyping has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

ecoli_serotyping code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

ecoli_serotyping is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

ecoli_serotyping releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed ecoli_serotyping and discovered the below as its top functions. This is intended to give you an instant insight into ecoli_serotyping implemented functionality, and help decide if they suit your requirements.

Start the celeryper server
Create allele fasta file
Check the structure of a database
Create the output directory
Predict a serotype from a blast output
Convert to a dataframe
Read blast output into a pandas DataFrame
Calculate the prediction for each gene
Download MASH and assembly summary
Determine if a file is downloaded
Set the lock file
Download assembly summary files
Verify ecoli output
Checks if the species name is an escher genus
Get sample name
Extract species and species from reference sketch
Write results to output directory
Get the number of alleles
Determine file format

Get all kandi verified functions for this library.

ecoli_serotyping Key Features

No Key Features are available at this moment for ecoli_serotyping.

ecoli_serotyping Examples and Code Snippets

No Code Snippets are available at this moment for ecoli_serotyping.

Community Discussions

No Community Discussions are available at this moment for ecoli_serotyping.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install ecoli_serotyping

You can install using 'pip install ecoli_serotyping' or download it from GitHub, PyPI.
You can use ecoli_serotyping like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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