deid | best effort anonymization for medical images using python | Computer Vision library

by pydicom Python Version: 0.3.23 License: MIT

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | deid Summary

deid is a Python library typically used in Artificial Intelligence, Computer Vision applications. deid has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. However deid has 4 bugs. You can install using 'pip install deid' or download it from GitHub, PyPI.

Best effort anonymization for medical images in Python. Please see our Documentation. These are basic Python based tools for working with medical images and text, specifically for de-identification. The cleaning method used here mirrors the one by CTP in that we can identify images based on known locations. We are looking for collaborators to develop and validate an OCR cleaning method! Please reach out if you would like to help work on this.

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Quality

Security

License

Reuse

Support

deid has a low active ecosystem.

It has 118 star(s) with 37 fork(s). There are 8 watchers for this library.

There were 1 major release(s) in the last 12 months.

There are 10 open issues and 125 have been closed. On average issues are closed in 39 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of deid is 0.3.23

Quality

deid has 4 bugs (2 blocker, 0 critical, 2 major, 0 minor) and 78 code smells.

Security

deid has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

deid code analysis shows 0 unresolved vulnerabilities.

There are 3 security hotspots that need review.

License

deid is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

deid releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

It has 5327 lines of code, 186 functions and 42 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed deid and discovered the below as its top functions. This is intended to give you an instant insight into deid implemented functionality, and help decide if they suit your requirements.

Main function
Takes a list of dicom files
Check if a dicom file has burned pixels
Get a dataset
Argument parser
Load a DEID config file
Load deid from a DEID file
Add section to config
Try to find dicom file
Read a text file
Determines if the output stream should be colored
Print a table
Load tags from file
Save the figure
Clean image data
Save the image
Returns a list of matching tags
Return an argument parser
Check if there are burned pixels in dicom_files
Convert a directory to a csv file
Save the animation
Load a dicom file
Extract identifiers from a list of dicom files
Get requirements
Update a tag
Generates a progress bar
Generate a UUID for a given item
Remove private identifiers

Get all kandi verified functions for this library.

deid Key Features

No Key Features are available at this moment for deid.

deid Examples and Code Snippets

No Code Snippets are available at this moment for deid.

Community Discussions

Trending Discussions on deid

Pymongo update a document with a condition

Correct way to drop a table in SQL Server

GCP DLP(Data Loss prevention) getting "Decryption failed: the ciphertext is invalid."

QUESTION

Pymongo update a document with a condition

Asked 2022-Feb-24 at 06:44

I'm trying to update a document under a condition with pymongo, but failed to figure out a way. Use this document as an example:

...

ANSWER

Answered 2022-Feb-23 at 21:31

You can combine the two operations into a single update operation:

Source https://stackoverflow.com/questions/71231656

QUESTION

Correct way to drop a table in SQL Server

Asked 2020-Jul-08 at 18:16

What is the best way to drop a table? The code I have does it two different ways. It will be dropped every week when I do a bulk insert. Thanks.

Like this?

...

ANSWER

Answered 2020-Jul-08 at 18:16

The second method will throw an error if the table doesn't exist, or if other database objects depend on it. The first one will not throw an error if the table doesn't exist, but it will still throw an error if other database objects depend on it.

Check out this answers on Stack-overflow:

Source https://stackoverflow.com/questions/62800961

QUESTION

GCP DLP(Data Loss prevention) getting "Decryption failed: the ciphertext is invalid."

Asked 2020-Mar-17 at 04:50

I am implementing the standard implementation of Google Cloud Platforms- Data Loss Prevention API in Python for De-Identifying text. This is from the example in https://github.com/GoogleCloudPlatform/python-docs-samples/blob/master/dlp/deid.py for the method deidentify_with_fpe

When I run the code with the parameters I mentioned below I am getting the following error.

Can someone suggest how to fix the error?

...

ANSWER

Answered 2020-Mar-03 at 18:57

Most likely, the key is not wrapped correctly. Can you please try the following commands to see that the decryption of the wrapped key generates the right output?

Source https://stackoverflow.com/questions/60471428

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install deid

You can install using 'pip install deid' or download it from GitHub, PyPI.
You can use deid like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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