pysam2 | Python 3.6 or newer for reading and manipulating SAM
kandi X-RAY | pysam2 Summary
kandi X-RAY | pysam2 Summary
pysam2 is a Python library. pysam2 has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.
[WORK IN PROGRESS]: Pysam2 is a module for Python 3.6 or newer for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib v2 C-API, the same one that powers samtools, bcftools, and tabix.
[WORK IN PROGRESS]: Pysam2 is a module for Python 3.6 or newer for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib v2 C-API, the same one that powers samtools, bcftools, and tabix.
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Quality
Security
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Support
pysam2 has a low active ecosystem.
It has 3 star(s) with 0 fork(s). There are 4 watchers for this library.
It had no major release in the last 6 months.
There are 1 open issues and 0 have been closed. There are 1 open pull requests and 0 closed requests.
It has a neutral sentiment in the developer community.
The latest version of pysam2 is current.
Quality
pysam2 has no bugs reported.
Security
pysam2 has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
License
pysam2 is licensed under the MIT License. This license is Permissive.
Permissive licenses have the least restrictions, and you can use them in most projects.
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pysam2 releases are not available. You will need to build from source code and install.
Build file is available. You can build the component from source.
Top functions reviewed by kandi - BETA
kandi has reviewed pysam2 and discovered the below as its top functions. This is intended to give you an instant insight into pysam2 implemented functionality, and help decide if they suit your requirements.
- Iterate through a VCF file
- Translate indel genotypes to indels
- Convert a VCF file into a pileup
- Encode a genotype
- Update the pysam files
- Return list of library libraries
- Locate files matching pattern
- Check that a file is present in the path_var
- Return a list of include directories
- Return a list of all defined defines
- Get pysam version
Get all kandi verified functions for this library.
pysam2 Key Features
No Key Features are available at this moment for pysam2.
pysam2 Examples and Code Snippets
No Code Snippets are available at this moment for pysam2.
Community Discussions
No Community Discussions are available at this moment for pysam2.Refer to stack overflow page for discussions.
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install pysam2
You can download it from GitHub.
You can use pysam2 like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
You can use pysam2 like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
Support
For any new features, suggestions and bugs create an issue on GitHub.
If you have any questions check and ask questions on community page Stack Overflow .
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