hotnet2 | finding significantly altered subnetworks in a large gene

by raphael-group Python Version: v1.2.1 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | hotnet2 Summary

hotnet2 is a Python library. hotnet2 has no bugs, it has no vulnerabilities, it has build file available and it has low support. However hotnet2 has a Non-SPDX License. You can download it from GitHub.

HotNet2 identifies subnetworks of a protein-protein interaction network with more mutations ("heat") than expected. HotNet2 was developed by the Raphael research group at Brown University.

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Quality

Security

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Support

hotnet2 has a low active ecosystem.

It has 91 star(s) with 45 fork(s). There are 19 watchers for this library.

It had no major release in the last 12 months.

There are 7 open issues and 12 have been closed. On average issues are closed in 174 days. There are 2 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of hotnet2 is v1.2.1

Quality

hotnet2 has 0 bugs and 0 code smells.

Security

hotnet2 has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

hotnet2 code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

hotnet2 has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

hotnet2 releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

hotnet2 saves you 2188 person hours of effort in developing the same functionality from scratch.

It has 4791 lines of code, 195 functions and 37 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed hotnet2 and discovered the below as its top functions. This is intended to give you an instant insight into hotnet2 implemented functionality, and help decide if they suit your requirements.

Load the network
Load the edge list from a file
Convert a list of edges into an adjacency matrix
Compute the difference between the difference matrix A and beta
Merge two objects
Computes the weighted sum of a matrix
Compute the similarity matrix
A balanced beta function
Generate a JSON output from the results
Compute coverage
Return a list of edges
Construct a dictionary of mutations
Get the JSON representation of a component
Get a list of nodes
R Compute the linkage
Reorder the nodes in the linkage matrix
Create a parser for the input argument
Create a configuration object

Get all kandi verified functions for this library.

hotnet2 Key Features

No Key Features are available at this moment for hotnet2.

hotnet2 Examples and Code Snippets

No Code Snippets are available at this moment for hotnet2.

Community Discussions

No Community Discussions are available at this moment for hotnet2.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install hotnet2

Latest tested version in parentheses:.
Python (2.7.12) a. NumPy (1.12.1) b. SciPy (0.19.0) c. NetworkX (1.11) d. h5py (2.7.0)
gcc and gfortran (5.4.0)

Support

Please visit the HotNet Google Group to post questions and view discussions from other users about HotNet or HotNet2, or contact us through our research group's website.

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