worms | Worm detection within images using Image Processing Methods | Computer Vision library

by thien Python Version: Current License: No License

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | worms Summary

worms is a Python library typically used in Artificial Intelligence, Computer Vision, Deep Learning applications. worms has no bugs, it has no vulnerabilities and it has low support. However worms build file is not available. You can download it from GitHub.

Worm detection within images using Image Processing Methods

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Security

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Support

worms has a low active ecosystem.

It has 5 star(s) with 1 fork(s). There are 1 watchers for this library.

It had no major release in the last 6 months.

worms has no issues reported. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of worms is current.

Quality

worms has no bugs reported.

Security

worms has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

worms does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

worms releases are not available. You will need to build from source code and install.

worms has no build file. You will be need to create the build yourself to build the component from source.

Top functions reviewed by kandi - BETA

kandi has reviewed worms and discovered the below as its top functions. This is intended to give you an instant insight into worms implemented functionality, and help decide if they suit your requirements.

Helper function to perform image processing
Scans an image
Calculate the coverage percentage of the data
Thresholding an image
Draw a set of points
Try to exit on exit
Write csv results to file

Get all kandi verified functions for this library.

worms Key Features

No Key Features are available at this moment for worms.

worms Examples and Code Snippets

No Code Snippets are available at this moment for worms.

Community Discussions

Trending Discussions on worms

Efficiently render 3D numpy bitmap array (y, x, RGB) to window on macOS (using openCV or otherwise)

How to output the 3 most frequent pattern matches in sorted order in the Linux terminal?

Pandas tocsv() function parameter sep add double quote on my data

Can't get the "power-up" in my MonoGame to load, no errors from compiling

How to invoke UI thread in Winform application without a form or control?

OpenCV: Reducing "fuzzy maxima" into single points

Submakes run the same rule multiple times

Graphing individual points on a grouped violin plot

How to avoid nested subscription with logic and side effects

I cant find why `.read_csv` cannot make a dataframe for `.shape` to recognize

QUESTION

Efficiently render 3D numpy bitmap array (y, x, RGB) to window on macOS (using openCV or otherwise)

Asked 2021-May-26 at 01:17

I'm rendering a dynamically changing numpy bitmap array and trying to improve my framerate.

Currently I'm using openCV:

...

ANSWER

Answered 2021-May-26 at 01:17

You may render the video using external sub-process video renderer.

I tested the suggested solution by piping the video frames to FFplay.
The solution is not working so well - the last frames are not shown.

Treat the solution as conceptual solution.

The code opens FFplay as sub-process, and write the raw frames to stdin pipe of FFplay.

Here is the code:

Source https://stackoverflow.com/questions/67429499

QUESTION

How to output the 3 most frequent pattern matches in sorted order in the Linux terminal?

Asked 2021-Apr-18 at 01:33

I have a file called survey.txt in which I used cut -d, -f1 survey.csv to get the following result:

...

ANSWER

Answered 2021-Apr-18 at 01:33

$ sort -f survey.txt | uniq -ic | sort -nr | head -n 3
      7 Twix
      5 Skittles
      4 Sour Patch Kids

Source https://stackoverflow.com/questions/67144394

QUESTION

Pandas tocsv() function parameter sep add double quote on my data

Asked 2021-Apr-17 at 18:46

I have been trying to save my dataframe to a txt file using the tocsv() function, but then some of my data come up with quotation mark, some don't. What is causing pandas to add quotation mark on my data and is there anyway to remove it?

Here's the dataframe

...

ANSWER

Answered 2021-Apr-01 at 23:43

Quotes are added whenever a data point contains the separator. In this case, space " ". You can change the separator, remove all the spaces in the data or have the quotes.

In other case, the syntax of the CSV file is not parsable because the interpretation of the space character is ambiguous.

Possibly using "\t" (a tab) as a separator could be a good solution for you.

Just specify: sep='\t'

Source https://stackoverflow.com/questions/66912741

QUESTION

Can't get the "power-up" in my MonoGame to load, no errors from compiling

Asked 2021-Apr-02 at 09:33

Having a slight problem making my power up appear/load on the screen and I have zero errors in VS19. The Worm class inherit from the same parent as the Player and Enemy Class, and they both load. The only difference between them is that Worm loads in Update() instead of LoadContent() so I can only assume something is wrong with the code in there.

Let me know if you see anything weird, thanks in advance!

Global declared a list and a texture-type:

...

ANSWER

Answered 2021-Apr-02 at 09:33

Forgot to set a bool variable to true

Source https://stackoverflow.com/questions/66915665

QUESTION

How to invoke UI thread in Winform application without a form or control?

Asked 2021-Feb-26 at 07:43

I have created a tray application for controlling some hardware components. How can I invoke the UI thread without a main form or control?

The tray app is started with Application.Run(new MyTrayApp()):

...

ANSWER

Answered 2021-Feb-26 at 07:43

Solved it with Application.Idle as mentioned by Loathing! Thanks everyone for your advice!

TrayApp:

Source https://stackoverflow.com/questions/66379459

QUESTION

OpenCV: Reducing "fuzzy maxima" into single points

Asked 2021-Feb-14 at 17:58

I have used:

...

ANSWER

Answered 2021-Feb-14 at 16:47

Update 2/14: Seems like skeletonization only took you part of the way there. Here's a better solution which I believe should get you the rest of the way. Here's how you would do it in scikit-image - maybe you can find the analog in OpenCV - seems like cv2.findContours would be a good start.

Source https://stackoverflow.com/questions/66193034

QUESTION

Submakes run the same rule multiple times

Asked 2021-Feb-09 at 17:59

I have some software built using parallel multi-level makefiles and I see that when my main Makefile runs two separate targets from a submakefile that have the same dependency, this dependency is run twice simultaneously and an error is created. Consider the following main Makefile in the project root folder:

...

ANSWER

Answered 2021-Feb-03 at 06:41

You could try to move the dep dependency to your top Makefile:

Source https://stackoverflow.com/questions/66014613

QUESTION

Graphing individual points on a grouped violin plot

Asked 2021-Jan-04 at 18:48

After a good amount of looking, I can't seem to find the exact answer to my question, so I figured I'd ask.

I want to make a grouped violin plot of a timecourse I have with two conditions ("Control RNAi" and "mex-6 RNAi") using ggplot2. Each of the data points comes from 3 different replicates ("Worm" factor in dataframe), so the dataframe format I have looks like this (with "mean_mex6" being the plotted Y value):

mean_mex6 RNAi Time Worm 2.4102356 Control RNAi 2hr worm1 0.8332575 Control RNAi 2hr worm1 2.5093177 Control RNAi 2hr worm1 0.8792359 Control RNAi 2hr worm1 1.2570116 Control RNAi 2hr worm1 1.0671826 Control RNAi 2hr worm1

There are many more lines in the dataframe, but the data I showed you above are just some datapoints that came from "worm1" on "Control RNAi" at the "2hr" timepoint.

I want all the individual points plotted in each RNAi group on the violin plot, but I want them plotted so that every datapoint from each "Worm" sample is a different color from the other worms. I have been able to create a grouped violin plot where all the individual points are plotted, but not color coded for each individual worm sample:

...

ANSWER

Answered 2021-Jan-04 at 18:41

The issue is that different groupings are applied for the geom_violin and the geom_quasirandom in your second plot. Therefore the points and the violins are "dodged" differently and do not align with each other.

To get your desired result you have to make use to the group aesthetic, i.e. group by both Time and RNAi using e.g. interaction.

Additionally instead of mapping Worm on color I mapped it on fill (Made more sense to me as Worm and RNai are different variables) and used filled points (shape=21) which gives different legends. But feel free to change that by switching back to color.

Using a more realistic random dataset including "all" options for the different variables try this:

Source https://stackoverflow.com/questions/65567792

QUESTION

How to avoid nested subscription with logic and side effects

Asked 2020-Dec-18 at 13:41

Most of the time I am able to avoid nested subscriptions but I'm not sure how to do it with this code:

...

ANSWER

Answered 2020-Dec-18 at 13:41


  const appleStuff = obtainAppleStuff();
    appleService
      .observeAll()
      .pipe(
        map(apples => {
          let apple = apples.find(this.appleFilter);
          if (!apple) {
            apple = appleService.create();
            apple.type = "Red";
            apple.size = 5;
          }
          return [apples, apple];
        }),
        tap(([, apple]) => {
          appleService.update(apple);
          this.linkAppleStuff(appleStuff, apple);
        }),
        filter(([apples]) => !!apples.length),
        switchMap(([apples, apple]) => this.appleService.observeWormsOfApple(apples[0]).pipe(withLatestFrom([apple])))
      )
      .subscribe(([worms, apple]) => {
        appleService.linkWorms(worms, apple);
      });

Source https://stackoverflow.com/questions/65357160

QUESTION

I cant find why `.read_csv` cannot make a dataframe for `.shape` to recognize

Asked 2020-Nov-30 at 09:33

Following a machine learning guide here: https://www.pluralsight.com/guides/scikit-machine-learning/

Running Python 3.8, might have a hunch that I need to run it in IPython but I think that opens up a new can of worms.

Also have all imported these libraries installed.

I left %matplotlib inline as a comment because i'm not running it in Jupyter.

...

ANSWER

Answered 2020-Nov-30 at 09:33

Seems like you just have a typo here. You've tried to print pd.shape when it should be df.shape. Hence the error.

Source https://stackoverflow.com/questions/65070994

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install worms

You can download it from GitHub.
You can use worms like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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