subsystems | making bioinformatics work with the SEED subsystems database | FTP library

 by   transcript Python Version: Current License: No License

kandi X-RAY | subsystems Summary

kandi X-RAY | subsystems Summary

subsystems is a Python library typically used in Networking, FTP applications. subsystems has no bugs, it has no vulnerabilities and it has low support. However subsystems build file is not available. You can download it from GitHub.

Code for making bioinformatics work with the SEED subsystems database a little easier. Location for obtaining the raw files - the FTP Seed site, Subsystems folder: ftp://ftp.theseed.org/subsystems/. For a full write-up of the initial reasons behind this code, check out the blog post here:
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            kandi-support Support

              subsystems has a low active ecosystem.
              It has 8 star(s) with 1 fork(s). There are 2 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 0 open issues and 1 have been closed. On average issues are closed in 2 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of subsystems is current.

            kandi-Quality Quality

              subsystems has 0 bugs and 0 code smells.

            kandi-Security Security

              subsystems has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              subsystems code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              subsystems does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              subsystems releases are not available. You will need to build from source code and install.
              subsystems has no build file. You will be need to create the build yourself to build the component from source.
              Installation instructions are not available. Examples and code snippets are available.
              It has 258 lines of code, 0 functions and 5 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

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            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of subsystems
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            subsystems Key Features

            No Key Features are available at this moment for subsystems.

            subsystems Examples and Code Snippets

            Displays the standard subsystems .
            javadot img1Lines of Code : 18dot img1no licencesLicense : No License
            copy iconCopy
            public static void fs(int n) {
            		if(n==1) {
            			System.out.println("0");
            		}
            		else {
            			int a=0;
            			int b=1;
            			int c=0;
            			System.out.println(a);
            			System.out.println(b);
            			for(int i=2; i  

            Community Discussions

            QUESTION

            Using Vs Code to debug a C SDL2 Game, how do I add breakpoints while running?
            Asked 2022-Apr-01 at 17:55

            I'm using Vs Code as my IDE.

            I've figured out how to add breakpoints and have the debugger hit them, but only if they're added before compiling. In other game development environments I'm used to being able to add a breakpoint whenever I want to halt the game and check things out.

            Is there any way to add breakpoints while my game is running?

            This is the command I'm running to build my game.

            ...

            ANSWER

            Answered 2022-Apr-01 at 17:55

            After adding a checkpoint, you need to send SIGINT to your program by pressing CtrlC in its terminal.

            This will pause the program. After you resume it with the debugger, any previously set checkpoints will work.

            I don't have experience with the stock C++ extension, but at least in the Native Debug extension you need to add "windows": {"terminal": ""}, to the current configuration in launch.json, to get a dedicated terminal for your app.

            Source https://stackoverflow.com/questions/71710928

            QUESTION

            Recursive lookup problem in Puppet and Hiera
            Asked 2022-Mar-20 at 15:10

            Puppet agent fails with the following error:

            ...

            ANSWER

            Answered 2022-Mar-20 at 15:10

            AFAICT it is correctly set-up and both files above are considered in the hierarchy for node agent01.

            You need to appreciate that Hiera is a flat key / value store that happens to support values with structured types. The key / subkey syntax that you demonstrate using with the lookup interpolation function might lead a person to mistake the data model for some kind of tree, but such a view leads to incorrect expectations.

            In this case, the Hiera data presented defines two values for key my. The structure of those values is an altogether secondary consideration. You having not overridden the default lookup strategy for that key, you get a priority lookup for the whole value of that key. There are then two issues with your data definition:

            1. The highest-priority of those values, which is the only one that matters in this case, does not provide the data that you are trying to retrieve via the lookup function.

            2. As the diagnostic says, you have a recursive lookup: in order to load the value associated with key my, the lookup function within requires Hiera to first load the value of key my.

            You could resolve (1) by specifying deep merging for my, but I do not expect that to resolve (2).

            You need to restructure the data, bearing in mind Hiera's flat(-ish) data model. It's no particular problem for one of the items to be or contain a lookup table of IP addresses, but that can be referenced only externally or from the values of different items.

            Source https://stackoverflow.com/questions/71526395

            QUESTION

            Taking a conda environment to another PC efficiently
            Asked 2022-Mar-10 at 01:41

            This may be a noob question, I am new to using Conda environments. I am looking for some advice on how to tackle the following workflow in the best way.

            I have both a work desktop and a desktop at home. I want to be able to, at the end of the day, take my work environment home.

            Note: I work in Ubuntu on subsystems for windows

            Say I start a project from scratch. I currently use the following workflow:

            1. I create a conda environment.

              conda create --name my_new_project python=3.10

            2. activate my workspace.

              conda activate my_new_project

            3. I install python packages I need:

              conda install -c conda-forge opencv etc...

            4. At the end of the day I want to copy that environment and take it to another PC, so I do the following:

              conda env export --f my_new_project.yml

            5. Finally on my home PC I do

              conda env create --file my_new_project.yml

            This works but requires me to make a new environment every time I switch PC. Is there a way to load the differences between the two conda environments and only add the new packages? Or is there another better way to tackle this?

            ...

            ANSWER

            Answered 2022-Mar-10 at 01:41

            There's no need to create a new environment every time. You only do that once and then update the existing environment, i.e. use the following as step 5:

            Source https://stackoverflow.com/questions/71414158

            QUESTION

            How to distinguish Java on z/OS from Java on Linux on z/OS?
            Asked 2022-Feb-18 at 09:21

            Is Java on z/OS and Java on Linux on IBM Z systems distinguishable from each other by os.name and/or os.arch properties? What about UNIX services for z/OS, does it have distinctive Java distribution?

            Update 1

            My understanding is that z/OS uses dot or colon (?) as path component separator while Unix-like subsystem uses solidus. My expectation is that there is Java for z/OS which uses whatever native C library and executable file format z/OS has, using the dot/colon as separator, while z/OS UNIX subsystem and Linux on IBM Z use POSIX compatible C library and use ELF as executable format. I would expect there to be two different JREs, one for the z/OS Linux and another for the z/OS UNIX service subsystem. My expectation is that the EI_OSABI field in ELF file format header is distinct for Linux and for z/OS UNIX subsystem, thus there should be two different Java distributions.

            Is there z/OS Java which runs outside any of the Unix-like subsystems?

            ...

            ANSWER

            Answered 2022-Feb-18 at 09:21

            Trying to give an overview of how Linux, especially Linux on Z Systems and z/OS are different (or not). I'll need to simplify a lot to be able to keep it reasonably short.

            Update 1: Changed some wording to be more clear, and corrected typos.

            Linux, and Linux on Z Systems

            Linux is a UNIX-like operating systen that was first developed for Intel based systems (I think). Later, it became available for other hardware platforms, IBM Z Systems hardware being one of them. The Linux which runs on IBM mainframe hardware, or IBM Z Systems, is called Linux for System Z, or Linux on IBM Z; I'll call it zLinux hereafter for brevity.

            Linux is Linux, no matter what platform it runs on. This is mostly true for: How you install it, how you configure it, how you run it, what API is provides, etc. Differences might exist when it comes to hardware configuration, or booting. This is especially true for zLinux.

            Since the APIs are the same across, it offers source code portability, on an application level. And I consider the Java JVM an application in this context. Simplified this means, you take the source code, run it through the compiler that produces binaries for the target platform, and you're done.

            What you optionally can do, is code optimization for the target platform, possibly to spead up things. In that sense the Java JVM for zLinux might work differently under the covers than the Java JVM for, say, an Intel PC platform (I actually don't know, if this is the case or not). But this would not matter to Java applications.

            Running Programs on UNIX (e.g. Linux)

            A program running on a UNIX system runs as process. Simplified, the term process includes control structures, and the virtual address space (memory, process image). To run another program, some program already running needs to fork(), then exec(). This will create a new process for that program.

            The UNIX kernel does process management (programs runs as process), dispatching/undispatching onto/from a processor, memory management, file system management, priority management, user and group management using numeric uid, and numeric gid, etc., etc.

            z/OS

            z/OS is one of IBM's mainframe operating systems, which run on IBM Z Systems hardware. Though running on Z Systems, like zLinux does, z/OS has not much in common with a Linux, or UNIX system. Installation, configuration, and running z/OS couldn't be more different.

            z/OS MVS (without z/OS UNIX System Services)

            MVS, born in 1964, is a component, or part, of any z/OS system. Its kind of like what the kernel is to a UNIX system. MVS provides the APIs that programs running on z/OS call. I call such a program an MVS program here. These APIs, again, are completely different to UNIX APIs. So, even though the hardware is the same, binaries are not exchangable. You cannot easily port a UNIX program into a z/OS MVS program; you have to rewrite from scratch.

            MVS does task management (programs run as tasks), dispatching/undispatching onto/from a processor, memory management, data set management (MVS does not understand "UNIX file system"), priority management, user and group management using alphanumeric userid, and alphanumeric groupname, etc. etc.

            z/OS UNIX System Services

            In the early 1990s, IBM wanted to make it easier to port popular UNIX programs to z/OS, so the added UNIX APIs, and called this part (finally) z/OS UNIX System Services, short z/OS UNIX hereafter. This came out in 1994. z/OS UNIX is another component of z/OS (also called OMVS). It is not a full UNIX kernel, but only adds to MVS what is required by UNIX, what MVS does not aleady have, foremost, process management, numeric uid, and gid, and a UNIX-like file system.

            IBM added everything required to become an xOpen and Posix compliant operating system. Now, you don't have to rewrite the UNIX program to run it on z/OS, you can more or less easily port it. There still are differences to cope with, foremost the dreadfull EBCDIC - ASCII difference. But API calls are 1:1, provided the program only uses compliant APIs.

            Running Programs on z/OS

            There are three kinds of programs:

            1. Programs that know nothing about UNIX, only use the MVS APIs, and deal with MVS data sets for I/O. Let's call them MVS programs.
            2. Programs that were ported from UNIX, or written by someone who only knows UNIX, which know nothing about MVS, only use the UNIX APIs, and deal with UNIX directoies and files for I/O. Let's call them pure z/OS UNIX programs. (Well, this category does nor really exist, see *) below).
            3. Programs that know both MVS, and z/OS UNIX, which call MVS, and z/OS UNIX APIs, and deal with MVS data sets, as well as with UNIX directories, and files. Let's call them mixed mode pograms.

            *) Every program needs memory, and every program wants to become dispateched on the processor eventually. Memory management, and task management is provided by MVS, not the UNIX kernel, so unknowingly, the program calls MVS APIs under the covers. Conclusion: There is no such thing as a "pure z/OS UNIX program". That leaves us with categories 1 and 3, only.

            All of those programs are stored as program objects, and reside either as member in a load library (data set), or as file in the UNIX file system. When run, the executable is loaded from either source in to an MVS address space, and is started as a task. All programs are managed as MVS tasks, have got all the MVS attributes, plus in case 3 above, also have UNIX attrributes (process id, uid, gid, etc).

            A program of type 1, becomes type 3 at runtime as soon as it makes a call to a UNIX API. So, there is no such thing as a wall, or boundary, or subsystem. It's all MVS programs, that may also be UNIX programs at the same time.

            Java on z/OS

            The Java JVM that runs on z/OS is no exception. It has been ported to z/OS, and since this was easier, as z/OS UNIX program (well "mixed mode program", as you should know by now). It has been optimized for the hardware and the specifics of z/OS in many aspects. But to Java applications it is not different. Java applications are not binaries, so the same Java byte-code runs on any Java JVM (with exceptions).

            Source https://stackoverflow.com/questions/71139776

            QUESTION

            bitnami Keycloak docker is not starting- "Failed to delete PingData in database"
            Asked 2022-Feb-07 at 11:00

            My docker compose has the following 2 services and keycloak used to startup just fine until today:

            ...

            ANSWER

            Answered 2022-Feb-07 at 11:00

            I have similar issues on my local machine, what I do then is:

            docker-compose down and docker-compose up if this does not help then I delete volume, be aware that volume will be named differently that in yaml file, it contains prefix ie:

            Source https://stackoverflow.com/questions/70297741

            QUESTION

            Executing code depending on parameter in controller
            Asked 2022-Feb-04 at 22:59

            So I have this controller code, with dependency injection setup

            ...

            ANSWER

            Answered 2022-Feb-04 at 22:59

            You'll most likely want to use a Factory or Provider for your manager. The factory or provider can produce the correct Manager based on the action parameters. Then you may not need to continue passing the appId around, since each Manager is written for a particular app.

            Source https://stackoverflow.com/questions/70993677

            QUESTION

            Why isn't my renderer initialising in SDL2?
            Asked 2022-Jan-31 at 10:44

            Sorry for the lot of code, I don't like to put everything in one file and you need to see all the files. Anyway, the problem is that the init function in the Window class (initialized in SDL.cpp and declared in SDL.hpp), the renderer isn't working? Of course, that means that the images and textures will also not load, but I'm thinking this is all because of the renderer failing. Can you figure out why it's doing this and help me out?

            If I haven't explained it very well just let me know, thanks.

            Main.cpp

            ...

            ANSWER

            Answered 2022-Jan-31 at 10:39
            1. SDL.hpp contains two SDL_Renderer* members: renderer and gRenderer. Remove the former and update this line in SDL.cpp to use the latter:

            Source https://stackoverflow.com/questions/70923736

            QUESTION

            How to change database from h2 to MySql in JBPM
            Asked 2022-Jan-21 at 09:28

            I want to change database (h2 to SQL) in JBPM

            from

            ...

            ANSWER

            Answered 2022-Jan-21 at 09:28

            I think manipulating standalone configuration files directly is not a good idea and is also error-prone.

            There are some scripts to do this, delivered with jbpm:

            Source https://stackoverflow.com/questions/70786019

            QUESTION

            How to create custom project file that works with fast-up-to-date (and avoids other problems)?
            Asked 2022-Jan-19 at 21:29

            I am trying to create a project file that performs few custom steps (specifically, it "wraps" existing Angular CLI project).

            Here is my best attempt (myproject.csproj):

            ...

            ANSWER

            Answered 2022-Jan-19 at 21:29

            QUESTION

            Cannot use AOS with Kerberos SSO on Alfresco 6.2
            Asked 2022-Jan-17 at 16:42

            We set up Alfresco 6.2 with Kerberos SSO, and our users need to use AOS.
            Kerberos SSO works : users are automatically logged in on Share from their Windows client.
            AOS seems to be properly installed : With NTLM auth, users can check-out, edit and save documents in MS Word from Share.

            But with Kerberos SSO on, when users check-out documents, the following stacktrace appears in Alfresco's logs, and users are not able to save modifications in the document :

            ...

            ANSWER

            Answered 2022-Jan-17 at 16:42

            It is actually a known bug, fixed in Alfresco 6.2.2.2 :
            https://alfresco.atlassian.net/browse/MNT-21758

            Installing ACS 6.2.2.21 fixed the issue.

            It is sad that this ticket (or the whole website ? ) is not indexed by search engines...

            Source https://stackoverflow.com/questions/70213011

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install subsystems

            You can download it from GitHub.
            You can use subsystems like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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