bneighbors | Nearest Neighbor Search in High Dimensional Spaces | Machine Learning library
kandi X-RAY | bneighbors Summary
kandi X-RAY | bneighbors Summary
Find exact nearest neighbors in relatively high dimensional spaces. Supports in-memory and out-of-core data sets (via bcolz and bvec). Gives realtime performance in 20-100 dimensional feature spaces, over hundreds of thousands of items. Includes the following similarity measures. The generalized similarity measure is based on an alternate normalization of cosine similarity, and includes both cosine similarity and lift as special cases.
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Top functions reviewed by kandi - BETA
- Return the neighbors of source_id
- Calculate the similarity between two vectors
- Computes the similarity between the given dots
- Calculates the jaccard similarity between dots
- Calculate the cosine similarity between the source norm
bneighbors Key Features
bneighbors Examples and Code Snippets
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QUESTION
I have a function that takes the neighbors of a node ,for the neighbors i use broadcast variable and the id of the node itself and it calculates the closeness centrality for that node.I map each node of the graph with the result of that function.When i open the task manager the cpu is not utilized at all as if it is not working in parallel , the same goes for memory , but the every node executes the function in parallel and also the data is large and it takes time to complete ,its not like it does not need the resources.Every help is truly appreciated , thank you.
For loading the graph i use val graph = GraphLoader.edgeListFile(sc, path).cache
ANSWER
Answered 2017-Jan-30 at 16:42To provide somewhat of an answer to your original question, I suspect that your RDD only has a single partition, thus using a single core to process.
The edgeListFile
method has an argument to specify the minimum number of partitions you want.
Also, you can use repartition
to get more partitions.
You mentionned coalesce
but that only reduces the number of partitions by default, see this question : Spark Coalesce More Partitions
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
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Install bneighbors
You can use bneighbors like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.
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