nanocomp | Comparison of multiple long read datasets

by wdecoster Python Version: 1.12.0 License: MIT

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kandi X-RAY | nanocomp Summary

nanocomp is a Python library. nanocomp has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Compare multiple runs of long read sequencing data and alignments. Creates violin plots or box plots of length, quality and percent identity and creates dynamic, overlaying read length histograms and a cumulative yield plot. As of version 1.1.0 NanoComp will also create a static png image for dynamic html plots, as the latter can get quite big and slow to load for big datasets. This however requires that you install orca. Without orca the script still works, but no static copies of dynamic plots are created.

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Quality

Security

License

Reuse

Support

nanocomp has a low active ecosystem.

It has 60 star(s) with 6 fork(s). There are 2 watchers for this library.

It had no major release in the last 12 months.

There are 5 open issues and 42 have been closed. On average issues are closed in 68 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of nanocomp is 1.12.0

Quality

nanocomp has 0 bugs and 0 code smells.

Security

nanocomp has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

nanocomp code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

nanocomp is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

nanocomp releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

nanocomp saves you 377 person hours of effort in developing the same functionality from scratch.

It has 899 lines of code, 34 functions and 9 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed nanocomp and discovered the below as its top functions. This is intended to give you an instant insight into nanocomp implemented functionality, and help decide if they suit your requirements.

Create a violin plot
Process violin and box
Overlay_histogram
Plot a histogram
Plots a histogram of the percent of the percent identity
Plots a histogram of the given palette
Convert a csv file to html
Split a list of values into chunks
Make HTML report
Argument parser
Make plots from data
Plots read length histogram
Draws the percent reference identity identity
Calculate cumulative cumulative counts for a given dataset
Plot yield per individual
Plots the trace of a trace

Get all kandi verified functions for this library.

nanocomp Key Features

No Key Features are available at this moment for nanocomp.

nanocomp Examples and Code Snippets

No Code Snippets are available at this moment for nanocomp.

Community Discussions

No Community Discussions are available at this moment for nanocomp.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install nanocomp

This script is written for Python3.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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