NanoPlot | Plotting scripts for long read sequencing data | Genomics library

by wdecoster Python Version: 1.43.0 License: MIT

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | NanoPlot Summary

NanoPlot is a Python library typically used in Artificial Intelligence, Genomics applications. NanoPlot has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can install using 'pip install NanoPlot' or download it from GitHub, PyPI.

Plotting tool for long read sequencing data and alignments.

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Quality

Security

License

Reuse

Support

NanoPlot has a low active ecosystem.

It has 307 star(s) with 39 fork(s). There are 7 watchers for this library.

There were 1 major release(s) in the last 6 months.

There are 10 open issues and 281 have been closed. On average issues are closed in 131 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of NanoPlot is 1.43.0

Quality

NanoPlot has 0 bugs and 0 code smells.

Security

NanoPlot has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

NanoPlot code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

NanoPlot is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

NanoPlot releases are available to install and integrate.

Deployable package is available in PyPI.

Build file is available. You can build the component from source.

Installation instructions, examples and code snippets are available.

NanoPlot saves you 667 person hours of effort in developing the same functionality from scratch.

It has 1571 lines of code, 57 functions and 14 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed NanoPlot and discovered the below as its top functions. This is intended to give you an instant insight into NanoPlot implemented functionality, and help decide if they suit your requirements.

Runs the test
Create a list of length plots
Create a scatter plot
Plot sequencing speed over time
Generates a plot of the cumulative yield by length
Encode the figure
Base64 encode the figure
Return base64 encoded image
Get command line arguments
List available colors
List all colormaps
Plot sequencing speed over time
Saves the figure to file
Save plot object to file
Generate a summary report
Convert pandas dataframe to HTML
Splits values into chunks
Check if a valid color is valid
Get the colors and colormaps
Generate dynamic histogram plot
Plot a histogram of data
Create HTML report
Calculate stats from datadf
Check if a colormap is valid
Make plots from data
Filters the dataframe according to the settings

Get all kandi verified functions for this library.

NanoPlot Key Features

No Key Features are available at this moment for NanoPlot.

NanoPlot Examples and Code Snippets

No Code Snippets are available at this moment for NanoPlot.

Community Discussions

Trending Discussions on NanoPlot

How to write a Snakemake rule-all, where expand statements can handle the absence of all particular input files

QUESTION

How to write a Snakemake rule-all, where expand statements can handle the absence of all particular input files

Asked 2020-Dec-16 at 12:14

I want to write a Snakemake-Pipeline to process either short or long read sequencing files or both types, depending on which type of files is provided in the input file. First my Snakefile calls a shell script that creates a config file with the name of all short read files in the input directory under the heading short_reads and all long read files under the heading long_reads. This is followed by my all rule:

...

ANSWER

Answered 2020-Dec-16 at 12:14

Does the following work?

Source https://stackoverflow.com/questions/65314358

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install NanoPlot

Upgrade to a newer version using: pip install NanoPlot --upgrade. The script is written for python3.

Support

I welcome all suggestions, bug reports, feature requests and contributions. Please leave an issue or open a pull request. I will usually respond within a day, or rarely within a few days.

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