bbr | r interface for model and project management | Development Tools library

 by   metrumresearchgroup R Version: 1.5.0 License: Non-SPDX

kandi X-RAY | bbr Summary

kandi X-RAY | bbr Summary

bbr is a R library typically used in Utilities, Development Tools applications. bbr has no bugs, it has no vulnerabilities and it has low support. However bbr has a Non-SPDX License. You can download it from GitHub.

bbr is an R interface for running bbi. Together they provide a solution for managing projects involving modeling and simulation with a number of software solutions used in pharmaceutical sciences. Currently, only NONMEM modeling is supported, though we are in the process of Stan with plans for other modeling software as well. You can get more detailed information on bbi (the underlying CLI tool) here. bbr is intended to help scientists manage the entire modeling workflow from within R. Users can submit models, consume outputs and diagnostics, and iterate on models. Furthermore, workflow tools–like simple tagging of models and model inheritence trees–make reproducibility and external review much more streamlined.
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              bbr has a low active ecosystem.
              It has 17 star(s) with 0 fork(s). There are 7 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 58 open issues and 212 have been closed. On average issues are closed in 186 days. There are 6 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of bbr is 1.5.0

            kandi-Quality Quality

              bbr has no bugs reported.

            kandi-Security Security

              bbr has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              bbr has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              bbr releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of bbr
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            bbr Key Features

            No Key Features are available at this moment for bbr.

            bbr Examples and Code Snippets

            No Code Snippets are available at this moment for bbr.

            Community Discussions

            QUESTION

            How to count unique data occuring in multiple categorical columns from a pyspark dataframe
            Asked 2021-Feb-12 at 14:02
            The Problem:

            In a ML based scenario, I am trying to see the occurrence of data from multiple columns in an Inference file versus the files that were provided to me for Training. I need this to be found only for categorical variables, since numerical attributes are scaled.

            The Expectation:

            I've got some success in doing the following in Standard SQL query but I wish to move this into PySpark.

            The Training file looks something like this:

            A B C Class 10 0.2 RDK AAA 10 0.2 RDK AAA 10 0.2 RDK AAA 10 1.3 USW ACA 10 1.3 USW ACA 10 1.3 USW ACA 8 0.2 RDK BBV 8 0.1 RDJ BBR 10 0.2 RDK AAA 10 5.1 RDK AAA 8 0.1 RDJ BBR 8 0.1 RDJ BBR 10 5.1 RDK AAA 10 5.1 RDK AAA 8 0.1 RDJ BBR 8 0.1 RDJ BBR

            and using sql I am able to get the desired output. However notice that I am matching only Col A and C since they are categorical in nature:

            ...

            ANSWER

            Answered 2021-Feb-12 at 14:02
            df = train_file.join(test_file, on=['A', 'C'], how='left_outer')
            group_df = df.groupBy(['A', 'C']).agg(f.count('class'))
            

            Source https://stackoverflow.com/questions/66171027

            QUESTION

            Why is my occlusion culling failed with Three.js?
            Asked 2021-Feb-01 at 03:07

            First I knew that Three.js does not have official support for occlusion culling. However, I thought it's possible to do occlusion culling in an offscreen canvas and copy the result back to my Three.js WebGLCanvas.

            Basically, I want to transform this demo to a Three.JS demo. I use Three.js to create everything, and in a synced offscreen canvas, I test occlusion culling against each bounding box. If any bounding box is occluded, I turn off the visibility of that sphere in the main canvas. Those are what I did in this snippet. but I don't know why it failed to occlude any sphere.

            I think a possible issue might be coming from calculating the ModelViewProjection matrix of the bounding box, but I don't see anything wrong. Could somebody please help?

            ...

            ANSWER

            Answered 2021-Feb-01 at 03:07

            At a minimum, these are the issues I found.

            1. you need to write to the depth buffer (otherwise how would anything occlude?)

              so remove gl.depthMask(false)

            2. you need to gl.flush the OffscreenCanvas because being offscreen, one is not automatically added for you. I found this out by using a normal canvas and adding it to the page. I also turned on drawing by commenting out gl.colorMask(false, false, false, false) just to double check that your boxes are drawn correctly. I noticed that when I got something kind of working it behaved differently when I switched back to the offscreen canvas. I found the same different behavior if I didn't add the normal canvas to the page. Adding in the gl.flush fixed the different behavior.

            3. depthSort was not working

              I checked this by changing the shader to use a color and I passed in i / NUM_SPHERES as the color which made it clear they were not being sorted. The issue was this

            Source https://stackoverflow.com/questions/65976999

            QUESTION

            How to get max of one date in a table in sql
            Asked 2020-Oct-24 at 09:18

            I have written the below code -

            ...

            ANSWER

            Answered 2020-Oct-24 at 03:49

            First rank the rows by their ENRT_CVG_STRT_DT per person (assumed identified by PAPF.PERSON_NUMBER). Then filter on rows that are top.

            Source https://stackoverflow.com/questions/64509432

            QUESTION

            RuntimeError("grad can be implicitly created only for scalar outputs")
            Asked 2020-Aug-03 at 23:08

            I have following code for train function for training an A3C. I am stuck with following error.

            ...

            ANSWER

            Answered 2020-Aug-03 at 23:08

            The pytorch error you get means "you can only call backward on scalars, i.e 0-dimensional tensors". Here, according to your prints, policy_lossis not scalar, it's a 1x4 matrix. As a consequence, so is policy_loss + 0.5 * value_loss. Thus your call to backward yields an error.

            You probably forgot to reduce your losses to a scalar (with functions like norm or MSELoss ...). See example here

            The reason it does not work is the way the gradient propagation works internally (it's basically a Jacobian multiplication engine). You can call backward on a non-scalar tensor, but then you have to provide a gradient yourself, like :

            Source https://stackoverflow.com/questions/63218710

            QUESTION

            Regex replace in capture group
            Asked 2019-Nov-18 at 22:47

            I have a snippet of text from EDI X12. I am trying to find lines where a BBQ segment is followed by another BBQ segment. I want to replace all BBQ segments in the second line with BBB

            Orig text

            ...

            ANSWER

            Answered 2019-Nov-18 at 21:23
            • Ctrl+H
            • Find what: (?:^HI\*BBQ\b.+?~\RHI\*BB|\G(?!^).*?\bBB)\KQ\b
            • Replace with: B
            • CHECK Match case
            • CHECK Wrap around
            • CHECK Regular expression
            • UNCHECK . matches newline
            • Replace all

            Explanation:

            Source https://stackoverflow.com/questions/58921455

            QUESTION

            Inbound channel adapter throwing "no output-channel or replyChannel header available" error
            Asked 2019-Jul-22 at 15:24

            I would like to get the message from JMS and send it as HTTP request and in case of failure, enqueue it again to JMS.

            I've tried using inbound-message-adapter and message-driven-channel-adapter, but it fails as I get "ChannelResolutionException: no output-channel or replyChannel header available" exception but since I do not want to reply to inbound-message-adapter, not sure why would I include a replyChannel header

            ...

            ANSWER

            Answered 2019-Jul-22 at 15:24

            QUESTION

            How to set up a flag to in entrypoint of docker container
            Asked 2019-Mar-12 at 00:38

            I have Dockerfile with entrypoint:

            ...

            ANSWER

            Answered 2019-Mar-11 at 14:39

            You should be able to pass some environnement variable from you run command to your CMD before the "cmd" is triggered. To do such, try using the '-e' clause this way (not tested, but should work):

            Source https://stackoverflow.com/questions/55103583

            QUESTION

            sed/awk processing question for heavy 3GB csv database
            Asked 2019-Feb-12 at 17:12

            I’ve been given the responsibility of taking care of a few old LTO tape databases and thought it would be a nice opportunity to build a functional library and learn some bash scripting and text processing at the same time. The csv databases are about 30 million lines long at about 3GB each. I’ve become decently effective at using grep and regex for locating lines, but now I’d like to reformat the entire csv file with sed/awk for even faster processing. This is more difficult than I expected and was hoping some experts can point me in the right direction. The format of the csv database is as follows:

            ...

            ANSWER

            Answered 2019-Feb-12 at 04:40
            awk -F, '{
             {if (/^[A-Z0-9]* -$/)
              {split($1,name," ")}
             else if (NF == 4 && $4 != "Time Last Modified")
              {print $0","name[1]}}}' tape.txt
            

            Source https://stackoverflow.com/questions/54642631

            QUESTION

            Scala - for : type mismatch
            Asked 2018-Nov-05 at 19:06

            Here is the structure : - Points - Segments - Paths

            ...

            ANSWER

            Answered 2018-Nov-05 at 19:06

            I think sometimes it can be helpful to generalize a bit when solving these kinds of problems. Consider the function below:

            Source https://stackoverflow.com/questions/53132178

            QUESTION

            REGEX: PCRE atomic group doesn't work
            Asked 2018-Aug-27 at 06:51

            In my PCRE regular expression I used an atomic group to reduce backtracks.

            ...

            ANSWER

            Answered 2018-Aug-26 at 08:21

            Because that's how atomic group works. The idea is:

            at the current position, find the first sequence that matches the pattern inside atomic grouping and hold on to it. (Source: Confusion with Atomic Grouping - how it differs from the Grouping in regular expression of Ruby?)

            So if there is no match inside an atomic group, it will iterate through all options. You can use conditionals instead:

            Regex101

            Source https://stackoverflow.com/questions/52020149

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install bbr

            You can install the latest released version of bbr via MPN snapshots from any snapshot date in 2021 or later. (An earlier version of this package was available under the name rbabylon in snapshot dates 2020-03-07 through 2020-12-21.).

            Support

            You can find documentation and a “Getting Started” vignette that shows users how to set up bbr and demonstrates the basic modeling workflow here.
            Find more information at:

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            https://github.com/metrumresearchgroup/bbr.git

          • CLI

            gh repo clone metrumresearchgroup/bbr

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            git@github.com:metrumresearchgroup/bbr.git

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