renv | renv : Project environments for R | Continous Integration library

by rstudio R Version: 0.17.3-62 License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | renv Summary

renv is a R library typically used in Devops, Continous Integration applications. renv has no bugs, it has no vulnerabilities, it has a Permissive License and it has medium support. You can download it from GitHub.

The renv package helps you create reproducible environments for your R projects. Use renv to make your R projects more:. Isolated: Installing a new or updated package for one project won't break your other projects, and vice versa. That's because renv gives each project its own private package library. Portable: Easily transport your projects from one computer to another, even across different platforms. renv makes it easy to install the packages your project depends on. Reproducible: renv records the exact package versions you depend on, and ensures those exact versions are the ones that get installed wherever you go.

Support

Quality

Security

License

Reuse

Support

renv has a medium active ecosystem.

It has 844 star(s) with 107 fork(s). There are 51 watchers for this library.

It had no major release in the last 6 months.

There are 43 open issues and 1142 have been closed. On average issues are closed in 282 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of renv is 0.17.3-62

Quality

renv has 0 bugs and 0 code smells.

Security

renv has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

renv code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

renv is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

renv releases are not available. You will need to build from source code and install.

Installation instructions, examples and code snippets are available.

It has 11 lines of code, 0 functions and 1 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

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renv Key Features

No Key Features are available at this moment for renv.

renv Examples and Code Snippets

No Code Snippets are available at this moment for renv.

Community Discussions

Trending Discussions on renv

Problems installing older version of Bioconductor's mixOmics packages in R

renv + venv + jupyterlab + IRkernel: will it blend?

renv::status() returns Error in seq_len(length(splat) - 1) :

I compiled R from source and it doesn't find certificates

Error: package or namespace load failed for ‘rjags’

Is it possible for `renv` to be "bypassed" or temporarily turned off?

Why does cirlceCI does not build successfully when renv is part of a R package?

How to rename values in column having a specific separation symbols?

Weird behavior when wrapping purrr::map within dplyr::mutate

Updating R packages in anaconda but getting a clang-12 error

QUESTION

Problems installing older version of Bioconductor's mixOmics packages in R

Asked 2022-Feb-25 at 04:17

I've spent the day trying to load the appropriate package versions in R that I saved in a renv lockfile.

I used the package RVAideMemoire which is tied in with mixOmics in bioconductor, which can't be loaded automatically using renv::restore().

I followed the steps outlined here to install the appropriate version of bioconductor (3.11) to get moxOmics version 6.12.1.

R how to install a specified version of a bioconductor package?

Unfortunately I ended up with mixOmics version 6.14.1. I attempted to load the earlier version using:

...

ANSWER

Answered 2022-Feb-25 at 04:17

BiocManager::install() doesn't provide an interface for installing specific versions of a package. The documentation for the version argument states:

version: 'character(1)' Bioconductor version to install, e.g., 'version = "3.8"'. The special symbol 'version = "devel"' installs the current 'development' version.

That is, it relates to the Bioconductor version, not the package version.

That said, you should be able to use renv to install a specific version of the package from Bioconductor. For example:

Source https://stackoverflow.com/questions/71247393

QUESTION

renv + venv + jupyterlab + IRkernel: will it blend?

Asked 2022-Feb-24 at 20:06

Short version

What is the simple and elegant way to use renv, venv and jupyterlab with IRkernel together? In particular, how to automatically activate renv from jupyter notebook that is not in the root directory?

Long version

I'm embracing a "polyglot" data science style, which means using both python and R in tandem. Now venv is awesome, and renv is awesome, and jupyterlab is awesome, so I'm trying to figure out what is the neat way to use them all together.

I almost have it, so probably a few hints would be enough to finish this setup. Here's where I'm at.

System

Start with a clean OS, and install system level requirements: R + renv and Python + venv. For example on Ubuntu it would be approximatelly like that:

...

ANSWER

Answered 2022-Feb-24 at 20:06

I opened this question as an issue in the renv github repo, and maintainers kindly provided a workaround. The contents of the notebooks/.Rprofile should be as follows:

Source https://stackoverflow.com/questions/71242328

QUESTION

renv::status() returns Error in seq_len(length(splat) - 1) :

Asked 2022-Feb-18 at 22:33

I ran

...

ANSWER

Answered 2022-Feb-18 at 22:33

Your lockfile has merge conflict markers embedded:

Source https://stackoverflow.com/questions/71178562

QUESTION

I compiled R from source and it doesn't find certificates

Asked 2022-Jan-14 at 17:25

I am deploying multiple R versions on multiple virtual desktops. I've built 3.6.3 and 4.1.2 R from source on Ubuntu 18.04.3 LTS. None of them finds the system-wide Rprofile.site file in /etc/R or the system certificates in /usr/share/ca-certificates. However R (3.4.4) installed with APT has no such problems. I used Ansible, but for the sake of this question I reproduced the deployment for one host with a shell script.

...

ANSWER

Answered 2022-Jan-14 at 17:25

Finally I found the solution:

Since both system has the arch and OS. I cross copied the R compiled installations between them. The R which was compiled on the problematic system, but was run on the correct one gave the warnings below after the calling of the install.packages("renv", repos="https://cran.wu.ac.at/")

Source https://stackoverflow.com/questions/70707843

QUESTION

Error: package or namespace load failed for ‘rjags’

Asked 2021-Dec-30 at 23:13

I have a M1 Macbook Pro running OS Big Sur and just tried to install rjags and JAGS. I downloaded JAGS from https://sourceforge.net/projects/mcmc-jags/ without a problem, and ran install_packages("rjags"), but when I run library(rjags) I get this error:

...

ANSWER

Answered 2021-Dec-30 at 23:13

See here for a similar post.

So have you installed the correct version of JAGS on your Apple computer?

Essentially, rjags is an R interface and it needs an installed JAGS (a back-end you mentioned) to function.

Follow the instructions here to install JAGS on Apple computers with M1 chips.

Also from the link above (from JAGS development team):

A readme file is provided in the disk image - please do read it.
If you find that rjags fails to load after installation of JAGS, make sure you have installed the Mavericks or El Capitan binary of R from CRAN. If you really need the Snow Leopard build of R (or if you compiled R yourself) you will have to compile JAGS from source.

If you have followed the instructions above (and in the relevant README file) and are still having problems with installation of these binaries, please let us know via the JAGS discussion forum.

PS: I would comment if I could, but I am new here and don't have enough points to do so.

Source https://stackoverflow.com/questions/70533673

QUESTION

Is it possible for `renv` to be "bypassed" or temporarily turned off?

Asked 2021-Dec-01 at 18:38

I have an RStudio project that manages packages using renv, which works great.

But sometimes I want to debug or explore something using libraries on my main environment(right word?) that I don't want to add to the project. For example, maybe I want to run some long debug function and call beepr::beep() at the end. Is that possible without installing the beepr package to the project?

...

ANSWER

Answered 2021-Dec-01 at 18:38

You could technically disable sandboxing, which is where renv prevents packages installed in the system library from being made available in the project (which is why you wouldn't be able to use beepr::beep() in your example. You can change your user configuration easily, just see the documentation from env. The setting here would be renv.config.sandbox.enabled.

However, I don't think that's the best option. Depending on the snapshot type settings described in ?renv::snapshot, you needn't worry about installing beepr but it getting added to the lock file.

You can check or set the snapshot type using:

Source https://stackoverflow.com/questions/70189319

QUESTION

Why does cirlceCI does not build successfully when renv is part of a R package?

Asked 2021-Nov-22 at 04:34

Im trying to set up a CI for a R package. In that regard I`m considering circleCI, which has worked out with previous R projects. However this time, I get the following error:

...

ANSWER

Answered 2021-Nov-22 at 04:34

The issue here is most likely that your run stage, here:

Source https://stackoverflow.com/questions/70057936

QUESTION

How to rename values in column having a specific separation symbols?

Asked 2021-Oct-30 at 21:25

Values in my DataFrame look like this:

...

ANSWER

Answered 2021-Oct-30 at 18:11

You can use regex(re.search) to find the first occurence of _ + digit and then you can solve the problem.

Code:

Source https://stackoverflow.com/questions/69780672

QUESTION

Weird behavior when wrapping purrr::map within dplyr::mutate

Asked 2021-Oct-13 at 22:40

I am running into some errors I do not fully understand when trying to call purrr::map around dplyr::mutate. The reproducible code is as follows:

...

ANSWER

Answered 2021-Oct-13 at 22:40

It is an issue with rowwise group attribute. As we are looping over each element in map, just ungroup

Source https://stackoverflow.com/questions/69563138

QUESTION

Updating R packages in anaconda but getting a clang-12 error

Asked 2021-Sep-15 at 22:16

I'm on a mac m1 machine. I'm using RStudio in Anaconda and I wanted to update the R packages with the update button. However, I got the same error for many of the packages when I tried to update. Here is one example:

...

ANSWER

Answered 2021-Sep-15 at 22:16

It is simpler to avoid using install.packages() when using an R environment managed by Conda, especially when the package involves compilation. Instead, prefer using Conda for installation. In this particular case, use

Source https://stackoverflow.com/questions/69197113

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

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Install renv

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