dfs | Frequency Spectrum : Signatures of introgression | Video Utils library

 by   simonhmartin R Version: Current License: GPL-3.0

kandi X-RAY | dfs Summary

kandi X-RAY | dfs Summary

dfs is a R library typically used in Video, Video Utils applications. dfs has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

DFS is a simple extension to the classic D statistic (AKA the ABBA BABA test). DFS partitions D according to the frequencies of derived alleles. Thus, it reveals how the overall D value is broken down across different allele frequency classes (or bins). DFS therefore carries information about the timing and direction of introgression. Check out this SHINY app that allows you to explore how DFS behavies over a range of model parameters.
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            kandi-support Support

              dfs has a low active ecosystem.
              It has 6 star(s) with 0 fork(s). There are 1 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              dfs has no issues reported. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of dfs is current.

            kandi-Quality Quality

              dfs has no bugs reported.

            kandi-Security Security

              dfs has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              dfs is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              dfs releases are not available. You will need to build from source code and install.
              Installation instructions are not available. Examples and code snippets are available.

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            dfs Key Features

            No Key Features are available at this moment for dfs.

            dfs Examples and Code Snippets

            Run the DFS project on the top of the project hierarchy .
            javadot img1Lines of Code : 18dot img1no licencesLicense : No License
            copy iconCopy
            public static boolean doDFS(Project project, Stack stack) {
            		if (project.getState() == Project.State.PARTIAL) {
            			return false; // Cycle
            		}
            		
            		if (project.getState() == Project.State.BLANK) {
            			project.setState(Project.State.PARTIAL);
            			ArrayL  
            Get a dfs path .
            javadot img2Lines of Code : 18dot img2no licencesLicense : No License
            copy iconCopy
            private static Path dfs(int targetIdx, int curCity, int[] target, Map> graph, Path[][] dp) {
                    if (targetIdx == target.length) return new Path(0, new ArrayList<>());
                    if (dp[curCity][targetIdx] != null) return dp[curCity][target  
            dfs - graph
            javascriptdot img3Lines of Code : 16dot img3no licencesLicense : No License
            copy iconCopy
            function dfs(idx, level, graph) {
               var str = '';
            
               for(var i = 1; i <= level; i++) {
                  str += '   |';
               }
            
               var char = idxToChar(idx);
               str += ('-->' + char);
               console.log(str);
            
               for(i = 0; i < graph[idx].length; i++) {
                 

            Community Discussions

            QUESTION

            R remove common columns in dataframes
            Asked 2021-Jun-15 at 04:17

            I have 2 dfs (simplified example):

            ...

            ANSWER

            Answered 2021-Jun-15 at 01:51

            You can do this by using the dplyr package:

            Source https://stackoverflow.com/questions/67979001

            QUESTION

            a loop to create a list of matrices generated from two different data frames in R
            Asked 2021-Jun-14 at 17:39

            I have two data frames. df1 and df2. both with c columns
            using a clustering method, I ended up with 10 clusters. same clusters for each df is true. this means for example the 4th row of both df s go to the same cluster.
            I added a cluster column to both dfs, showing the assigned cluster for each row.

            I want to create a list.
            this list contains 10 matrices, such that.
            matrix 1, is a 2*c matrix. its first row is obtained by colmeans of those rows of df1 which are in cluster 1. and its 2nd row is obtained by colmeans of those rows of df2 which are in cluster 1.
            and matrix 2 , colmeans of cluster 2 and so on.
            this is what I ve done. but I get the 10th matrix only and not a list of matrices 1 to 10.
            I would appreciate any help with this.

            ...

            ANSWER

            Answered 2021-Jun-14 at 17:39

            The Mean.list should be initialized outside the loop and it can be a NULL list of length k

            Source https://stackoverflow.com/questions/67974835

            QUESTION

            pandas loop to run multiple cross tabs
            Asked 2021-Jun-14 at 15:31

            I have the following dataset and I want to compute all possible combinations of cross-tabulations in the most efficient way, I have been able to calculate pairs against one master variable, but not for all possibilities (i have popped what i mean in below). Is there a way to get this all in loop that could handle any number of columns? Thanks so much!

            data

            ...

            ANSWER

            Answered 2021-Jun-10 at 15:09

            Try with the itertools recipe for a powerset and modify to only keep combinations of length 2 or greater:

            Source https://stackoverflow.com/questions/67920513

            QUESTION

            Assistance needed scraping a site with Selenium in Python
            Asked 2021-Jun-13 at 16:16

            I am trying to scrape the NBA player names and projected fantasy score (not single stat DFS) using selenium. I've gotten as far as using selenium to automate clicking NBA, and selecting the fantasy score tab.

            From there, I see the players in a grid where I will like to scrape the points and names for each player. I have attempted to loop through the grid but I don't think I'm doing it right

            Can someone please take a look at my code and point me in the right direction ?

            ...

            ANSWER

            Answered 2021-Jun-12 at 18:58

            QUESTION

            How can I reduce Try and Except statements in error-handling code
            Asked 2021-Jun-12 at 00:07

            Working on a project that updates a database. New values (Rows) are updated from a folder containing Excel files. The values in the Excel files are provided by employees. Sometimes these employees are still working in the Excel file while trying to update the database. This results in a PermissionError.

            To avoid PermissionErrors, I use the Try and Except statement. This works fine but situations can occur that Excel files are not closed for a while and multiple Excel files are opened during the day.

            Thus, just one Try and Except statement wouldn't work. Therefore I used three Try and and Except statements which still doesn't guarantee that errors are handled properly.

            To solve this, I think a While loop or a break statement within the for loop would work? Tried to add a break statement at the end of the (first) except block but this didn't work..

            Is there any way to tackle this? Adding more Try and Except statements would work, but that just seems silly.

            ...

            ANSWER

            Answered 2021-Jun-11 at 22:51

            This is clearly iterative code, not cascaded dependencies. Yes, use a loop.

            Source https://stackoverflow.com/questions/67944153

            QUESTION

            Sample within a group multiple times in r using dplyr
            Asked 2021-Jun-11 at 16:28

            I am trying to pick samples within each group:

            ...

            ANSWER

            Answered 2021-Jun-11 at 15:48
            library(tidyverse)
            set.seed(1)
            n_repeat <- 2
            n_sample <- 2
            
            df <- data.frame(ID=c(1,1,1,2,2,2), score=c(10,20,30,40,50,60))
            
            df %>% 
              group_nest(ID) %>% 
              transmute(ID,
                        Score = map(data, ~as.vector(replicate(n_repeat, sample(.x$score, 2))))) %>% 
              unnest(Score) %>%
              group_by(ID) %>% 
              mutate(sample_no = rep(seq(n_repeat), each = n_sample)) %>% 
              ungroup()
            #> # A tibble: 8 x 3
            #>      ID Score sample_no
            #>         
            #> 1     1    10         1
            #> 2     1    20         1
            #> 3     1    30         2
            #> 4     1    10         2
            #> 5     2    50         1
            #> 6     2    40         1
            #> 7     2    60         2
            #> 8     2    40         2
            

            Source https://stackoverflow.com/questions/67939371

            QUESTION

            Loop through dataframes in global environment and apply function to them
            Asked 2021-Jun-11 at 03:54

            I'm going to explain what my code is supposed to do:

            First I import an arbitrary number of dataframes of the same number of columns and somewhat similar names (they're stock tickers).

            Second, I create a function that changes the data type of the first column (from factor to date), deletes one column and finally adds an arbitrary number of columns as functions of the other columns (like returns, moving average, etc.)

            Finally, since I'm working with plenty of dataframes, I want to apply this said function to all of them through a loop.

            Now, as simple as this sounds, I've encountered many issues with the third step.

            What I found online was this, to get all names of the dataframes in my environment:

            ...

            ANSWER

            Answered 2021-Jun-11 at 03:54

            Keeping your original formatear function

            Source https://stackoverflow.com/questions/67931043

            QUESTION

            Histograms side by side: change axis
            Asked 2021-Jun-09 at 18:27

            I have the following two dummy dfs:

            ...

            ANSWER

            Answered 2021-Jun-09 at 18:27
            1. I assume that you simply want to rotate the plot, add orientation="horizontal".

            2. You can share the axis of subplots by setting sharex=True or sharey=True.

            3. To share the range simply specify the limits of either axis: plt.xlim(0,4) and plt.ylim(-100,700)

            Source https://stackoverflow.com/questions/67909542

            QUESTION

            Hadoop NameNode Web Interface
            Asked 2021-Jun-09 at 14:18

            I have 3 remote computers (servers):

            • computer 1 has internal IP: 10.1.7.245
            • computer 2 has internal IP: 10.1.7.246
            • computer 3 has internal IP: 10.1.7.247

            (The 3 computers above are in the same network, these 3 computers are all using Ubuntu 18.04.5 LTS Operating System)

            (My personal laptop is in another different network, my laptop also uses Ubuntu 18.04.5 LTS Operating System)

            I use my personal laptop to connect to the 3 remote computers using SSH protocol and using user root : (Below ABC is a name)

            • computer 1: ssh root@ABC.University.edu.vn -p 12001
            • computer 2: ssh root@ABC.University.edu.vn -p 12002
            • computer 3: ssh root@ABC.University.edu.vn -p 12003

            I have successfully set up a Hadoop Cluster which contains 3 above computer:

            • computer 1 is the Hadoop Master
            • computer 2 is the Hadoop Slave 1
            • computer 3 is the Hadoop Slave 2

            ======================================================

            I starts HDFS of the Hadoop Cluster by using the below command on Computer 1: start-dfs.sh

            Everything is successful:

            • computer 1 (the Master) is running the NameNode
            • computer 2 (the Slave 1) is running the DataNode
            • computer 3 (the Slave 2) is running the DataNode

            I know that the the Web Interface for the NameNode is running on Computer 1, on IP 0.0.0.0 and on port 9870 . Therefore, if I open the web browser on computer 1 (or on computer 2, or on computer 3), I will enter the 10.1.7.245:9870 on the URL bar (address bar) of the web browser to see the Web Interface of the NameNode.

            ======================================================

            Now, I am using the web browser of my personal laptop.

            How could I access to the Web Interface of the NameNode ?

            ...

            ANSWER

            Answered 2021-Jun-08 at 17:56

            Unless you expose port 9870, your personal laptop on another network will not be able to access the web interface.

            You can check to see if it is exposed by trying :9870 to see if it is exposed. IP-address here has to be the global IP-address, not the local (10.* ) address.

            To get the NameNode's IP address, ssh into the NameNode server, and type ifconfig (sudo apt install ifconfig if not already installed - I'm assuming Ubuntu/Linux here). ifconfig should give you a global IP address (not the 255.* - that is a mask).

            Source https://stackoverflow.com/questions/67891388

            QUESTION

            Shoppers Delight with DFS: Array Combination in C#
            Asked 2021-Jun-09 at 13:37

            I am trying to use DFS in my answer.

            Problem:

            An Customer wants to buy a pair of jeans, shoes, skirt, and a top but has a limited budget in dollars. Given different pricing options for each product, determine how many options customer has to buy 1 of each product. You can not spend more money than budgeted amount.

            Example

            ...

            ANSWER

            Answered 2021-Jun-09 at 13:37

            Sorry it took me so long to get back to this - I was busy with the day job :-).

            You weren't very far wrong. The only changes that need to be made are in GetShoppingItem, which I show in full below. I have deliberately kept the changes to a minimum, in order to preserve as much of your logic as possible, so that you will better understand what is happening.

            Source https://stackoverflow.com/questions/67899478

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install dfs

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/simonhmartin/dfs.git

          • CLI

            gh repo clone simonhmartin/dfs

          • sshUrl

            git@github.com:simonhmartin/dfs.git

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