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Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles
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clinical-calculation-apiby open-health-hub
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10 Version:Current License: Strong Copyleft (AGPL-3.0)
presents a range of clinical calculations as a REST API, avoiding the need for the calculations to be implemented locally in applications
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Visual exploration of large genome interaction matrices with interactive small multiples.
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Fork of Chris Hafey's cornerstoneWADOImageLoader to load DICOM images from zipped DICOMDIR archives
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Node FHIR facade server built on Asymmetrik node-fhir-server-core.
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healthcare-api-token-generatorby GoogleCloudPlatform
JavaScript 10 Version:Current License: Permissive (Apache-2.0)
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🦠 Coronavirus Tracker
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Yet another form library for Kohana PHP
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genomics, biochemistry, biotechnology, cell biology, biophysics, ecology
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iPat allows you to perform GWAS and GS with drags and clicks!
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Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com
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Magyar Keresztény OpenLyrics adatbázis
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Explore and analyze biological sequence data
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Hierarchical-Genome-Assembly-HGAby aalokaily
Python 9 Version:Current License: Strong Copyleft (GPL-2.0)
Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads
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Tools for working with WGBS data
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Haplotype-based somatic genome simulator
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isomiR quantification and analysis pipeline
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MoBiDiC Priorization Algorithm
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Text mining tool to retrieve protein-protein interactions from the scientific literature.
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A python library for programmatic usage of EBI InterPro Genome Properties.
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Django app for dealing with Human Genome Reference data and keeping it up to date. Syncs data from HGNC and UCSC (RefSeq, etc)
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CoMOLA is a generic python tool for Constrained Multi-objective Optimization of Land use Allocation. It offers a framework to explore a landscape’s potential for ecosystem service supply and biodiversity conservation considering land use conversion and areal coverage constraints. CoMOLA can be used immediately by inputting a raster map representing the status-quo land use, ready-to-run models written in R including their input data, and (optional) information on constraints. The end product is a set of pareto-optimal solutions (land use maps) from which decision makers can discuss and select appropriate solutions according to their preferences.
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A REST client for Orthanc DICOM servers
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Source code and examples for translation of VCF files into FHIR format
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Teil des #WirVsVirus Hackathon. Idee ist im Prinzip digitale Abreißnummern zu haben. Man kreuzt irgendwo auf, registriert sich in einer Warteschlange und wird notifiziert, wenn man dran ist.
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COVID-19 corpus with annotated biomedical entities.
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Insight_Data_Engineering_Projectby MaryamBisadi
Python 9 Version:Current
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A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
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SERIMI approach for RDF Interlinking
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hl7-resource-patientby clinical-meteor
JavaScript 9 Version:Current License: No License (No License)
License: No License (No License)HL7 Argonaut FHIR - Patient Resource
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TCGA Splicing Variation Database
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An automated protocol to extract variation or expression from public NGS datasets
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Custom starter for Gatsby with a specific setup and structure for my favorite Bootstrap 4 and SCSS setup. Contains Jest and Enzyme for unit testing.
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🦠 Update a gist to contain global or country specific coronavirus stats
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A Delhi based COVID Tracker which provides you with accurate cases and for more features please download the app from link given below 😆😆
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task-geoby CoronaWhy
"Help us understand how geography affects virality."
Python 10Updated: 4 y ago License: Permissive (MIT)
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medicalAIby aibharata
Medical-AI is a AI framework specifically for Medical Applications https://aibharata.github.io/medicalAI/
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corona-databy msghera
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txtmonby rmhcovid
Remote monitoring of Covid-19 patients via REDCap survey tools
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ai-4-clinical-workflowby zenetio
Integrating AI to Clinical Workflow
Python 10Updated: 4 y ago License: Permissive (MIT)
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dpi1by hkawaji
Decomposition-based peak identification, which find peaks across a large number of TSS (transcription starting site) profiles
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clinical-calculation-apiby open-health-hub
presents a range of clinical calculations as a REST API, avoiding the need for the calculations to be implemented locally in applications
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hipilerby flekschas
Visual exploration of large genome interaction matrices with interactive small multiples.
JavaScript 10Updated: 4 y ago License: Permissive (MIT)
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cornerstoneArchiveImageLoaderby mbarnig
Fork of Chris Hafey's cornerstoneWADOImageLoader to load DICOM images from zipped DICOMDIR archives
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fhir-facade-starterby Asymmetrik
Node FHIR facade server built on Asymmetrik node-fhir-server-core.
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healthcare-api-token-generatorby GoogleCloudPlatform
Enables developers to programmatically generate OAuth 2 access tokens for use with Apigee and the Google Cloud Healthcare API
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covid19Trackerby shayant98
🦠 Coronavirus Tracker
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COVIDby Quintessential-SFT
Covid-19 Virus Informational Gatsby Website
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morfby samsoir
Yet another form library for Kohana PHP
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biologyby HussainAther
genomics, biochemistry, biotechnology, cell biology, biophysics, ecology
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iPatby Poissonfish
iPat allows you to perform GWAS and GS with drags and clicks!
Java 9Updated: 4 y ago License: No License (No License)
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smart-phaseby paulhager
A comprehensive and intelligent clinical phasing tool
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DermaHackby PikkaPikkachu
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f5nby SanojPunchihewa
Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com
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aszafby gyuris
Magyar Keresztény OpenLyrics adatbázis
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smofby incertae-sedis
Explore and analyze biological sequence data
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Hierarchical-Genome-Assembly-HGAby aalokaily
Hierarchical genome assembly: de novo bacterial genome assembly using high coverage short sequencing reads
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WGBS_Toolsby kwdunaway
Tools for working with WGBS data
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tHapMixby Illumina
Haplotype-based somatic genome simulator
Python 9Updated: 5 y ago License: Proprietary (Proprietary)
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umitoolsby weng-lab
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
Python 9Updated: 5 y ago License: Proprietary (Proprietary)
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quagmirby kevchn
isomiR quantification and analysis pipeline
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PaSDqcby parklab
A python library for single cell whole-genome sequencing quality evaluation
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ppaxeby scastlara
Text mining tool to retrieve protein-protein interactions from the scientific literature.
Python 9Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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pygenpropby Micromeda
A python library for programmatic usage of EBI InterPro Genome Properties.
Python 9Updated: 2 y ago License: Permissive (Apache-2.0)
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django-genomeby chopdgd
Django app for dealing with Human Genome Reference data and keeping it up to date. Syncs data from HGNC and UCSC (RefSeq, etc)
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CoMOLAby michstrauch
CoMOLA is a generic python tool for Constrained Multi-objective Optimization of Land use Allocation. It offers a framework to explore a landscape’s potential for ecosystem service supply and biodiversity conservation considering land use conversion and areal coverage constraints. CoMOLA can be used immediately by inputting a raster map representing the status-quo land use, ready-to-run models written in R including their input data, and (optional) information on constraints. The end product is a set of pareto-optimal solutions (land use maps) from which decision makers can discuss and select appropriate solutions according to their preferences.
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kumaraby mmatschiner
Comment on Munoz-Rodriguez et al. (2018)
Python 9Updated: 6 y ago License: No License (No License)
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Protein-feature-extractionby jithin8mathew
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
Python 9Updated: 4 y ago License: Permissive (MIT)
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berenby teffalump
A REST client for Orthanc DICOM servers
Python 9Updated: 4 y ago License: Strong Copyleft (GPL-3.0)
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VCF-2-FHIRby openelimu
Source code and examples for translation of VCF files into FHIR format
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digitaleswartenby methodpark
Teil des #WirVsVirus Hackathon. Idee ist im Prinzip digitale Abreißnummern zu haben. Man kreuzt irgendwo auf, registriert sich in einer Warteschlange und wird notifiziert, wenn man dran ist.
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covid19-corpusby davidcampos
COVID-19 corpus with annotated biomedical entities.
Python 9Updated: 4 y ago License: Permissive (MIT)
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Insight_Data_Engineering_Projectby MaryamBisadi
Python 9Updated: 4 y ago License: No License (No License)
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PyReQTLby nalomran
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
Python 9Updated: 5 y ago License: Permissive (MIT)
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SERIMI-RDF-Interlinkingby samuraraujo
SERIMI approach for RDF Interlinking
Ruby 9Updated: 5 y ago License: No License (No License)
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striuctby kachick
Struct + validation + inheritable + default_value + etc...
Ruby 9Updated: 4 y ago License: Permissive (MIT)
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derideby guzzlerio
Mocking library based on composition
JavaScript 9Updated: 7 y ago License: Permissive (MIT)
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hl7-resource-patientby clinical-meteor
HL7 Argonaut FHIR - Patient Resource
JavaScript 9Updated: 4 y ago License: No License (No License)
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TSVdbby wenjie1991
TCGA Splicing Variation Database
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deSRAby NCBI-Hackathons
An automated protocol to extract variation or expression from public NGS datasets
JavaScript 9Updated: 2 y ago License: Permissive (MIT)
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gatsby-starter-customby programmiri
Custom starter for Gatsby with a specific setup and structure for my favorite Bootstrap 4 and SCSS setup. Contains Jest and Enzyme for unit testing.
JavaScript 9Updated: 5 y ago License: Permissive (MIT)
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covid-boxby puf17640
🦠 Update a gist to contain global or country specific coronavirus stats
JavaScript 9Updated: 4 y ago License: Permissive (ISC)
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healthappby gauravdh9
A Delhi based COVID Tracker which provides you with accurate cases and for more features please download the app from link given below 😆😆
JavaScript 9Updated: 3 y ago License: No License (No License)
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EDMSuiteby ColdMatter
Molecular beam experiment control code, and EDM data analysis software.
C# 9Updated: 2 y ago License: Permissive (MIT)
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