disambiguate | Disambiguation algorithm for reads | Genomics library

 by   AstraZeneca-NGS C++ Version: v1.0.0 License: MIT

kandi X-RAY | disambiguate Summary

kandi X-RAY | disambiguate Summary

disambiguate is a C++ library typically used in Artificial Intelligence, Genomics applications. disambiguate has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
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            kandi-support Support

              disambiguate has a low active ecosystem.
              It has 20 star(s) with 14 fork(s). There are 28 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 4 open issues and 9 have been closed. On average issues are closed in 172 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of disambiguate is v1.0.0

            kandi-Quality Quality

              disambiguate has 0 bugs and 0 code smells.

            kandi-Security Security

              disambiguate has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              disambiguate code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              disambiguate is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              disambiguate releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.
              It has 286 lines of code, 5 functions and 2 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

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            disambiguate Key Features

            No Key Features are available at this moment for disambiguate.

            disambiguate Examples and Code Snippets

            No Code Snippets are available at this moment for disambiguate.

            Community Discussions

            QUESTION

            Why were parentheses disambiguated as a function declaration with std::istream_iterator?
            Asked 2022-Mar-28 at 12:23
            auto queue = [](string str) {
                istringstream ss(str);
                //std::copy(std::istream_iterator(ss),
                //          std::istream_iterator(),
                //          std::ostream_iterator(std::cout, " "));
            
                //deque q(std::istream_iterator(ss), std::istream_iterator{});
                deque q(std::istream_iterator(ss), std::istream_iterator());
                return q;
            };
            
            
            ...

            ANSWER

            Answered 2022-Mar-28 at 12:23

            QUESTION

            How to reassign result of concatenation in Julia?
            Asked 2022-Mar-14 at 12:44

            I need to create Vector of Vector of predefined structure in Julia. As of now I am trying to do it via iterative concatenation:

            ...

            ANSWER

            Answered 2022-Mar-14 at 12:44

            Normally use append! instead of vcat:

            Source https://stackoverflow.com/questions/71466436

            QUESTION

            Conflict between baseUrl and node_modules when importing
            Asked 2022-Mar-11 at 15:59

            I have a TS project with the following configuration:

            tsconfig.json (partial)

            ...

            ANSWER

            Answered 2022-Mar-11 at 15:49

            Can you try to update the tsconfig.json file like this:

            Source https://stackoverflow.com/questions/71393575

            QUESTION

            How does lspci find out physical slot number of a PCI(E) device?
            Asked 2022-Mar-04 at 19:45

            lspci is capable to show physical slot number in the verbose presentation:

            I'd like to find out how it does it. I am going to apply this method in the driver that I would like to modify, so it would enumerate the devices (with the same ID) and disambiguate the device files according to physical slot. Like /dev/device_physslot . The driver will run on Ubuntu 18

            I tried to dig in the source code. I found the relevant line 775 in https://github.com/pciutils/pciutils/blob/master/lspci.c:

            ...

            ANSWER

            Answered 2022-Feb-25 at 21:13

            If you run dmidecode it will show the stored platform information, which will tell you the mapping of physical slots to PCIe address. For example:

            Source https://stackoverflow.com/questions/71270906

            QUESTION

            XSLT Efficiently identify repeated nodes within a given range
            Asked 2022-Mar-02 at 12:46

            I'm working on some manuscript transcriptions in XML-TEI, and I'm using XSLT to transform it into a .tex document. My input document is made of tei:w tokens that represent each word of the text. MWE:

            ...

            ANSWER

            Answered 2022-Mar-02 at 12:46

            Not much different from what you did, still quite fast:

            Source https://stackoverflow.com/questions/71308930

            QUESTION

            GCC 11.x vexing-parse + inconsistent error (redeclaration as different symbol type), is it a GCC bug?
            Asked 2022-Feb-28 at 13:25

            The following code compiles with no problems from GCC 4.7.1 up to but not including GCC 11.1:

            ...

            ANSWER

            Answered 2022-Feb-28 at 13:25

            The difference is that your first snippet declares a function that exists globally; all your other declarations are of local entities.
            (Note that even if the declaration were valid, you couldn't call that function, since it can't exist.)

            In the last snippet, closure is not a type, so it can't be a declaration.

            Source https://stackoverflow.com/questions/71295439

            QUESTION

            VS2022 Extensibility: How to resolve "The type 'XXX' exists in both 'Assembly 1' and 'Assembly2' in T4 template execution
            Asked 2022-Jan-29 at 07:48

            I have an extension I'm updating from VS2019 to VS2022. It's a DSL using the Modeling SDK and has code generation via T4 templates.

            I have it pretty much converted but, when running the T4s, I get

            ...

            ANSWER

            Answered 2021-Nov-15 at 16:02

            I ran into a similar issue today with my T4 templates. After looking at your post and noodling on it for a couple of minutes I tried the following

            I found the file that was adding the EnvDTE assembly

            Source https://stackoverflow.com/questions/69975013

            QUESTION

            Explanation of scala "double definition" fix using by-name params or DummyImplicit
            Asked 2022-Jan-12 at 01:56

            I have a couple of solutions to a "double definition" problem, but I can't figure what they're really doing to work around the type erasure issue.

            I'll give some general context as well, since I'm probably approaching the problem wrong in the first place, but ultimately help understanding DummyImplicits & by-name params in this context is enough.

            Context

            I'm replacing parsers for deeply nested JSON where pretty much every value is optional, and nearly all data (including Int, Double, etc.) is stored as Strings. The classes that catch the parsed values take this general form (for now).

            ...

            ANSWER

            Answered 2022-Jan-12 at 01:56

            The relevant section of compiled code for option-1 looks like

            Source https://stackoverflow.com/questions/70660645

            QUESTION

            Get pointer to overloaded function that would be called
            Asked 2022-Jan-09 at 12:50

            Please refer to the following:

            ...

            ANSWER

            Answered 2022-Jan-09 at 12:50

            There is no way to get the function of an overload-set which would be called with the given arguments, unless you already know its signature.
            And if you know, what's the point?

            The problem is that for any given arguments, taking into account implicit conversions, references, cv-qualifiers, noexcept, old-style vararg, default arguments, and maybe also literal 0 being a null pointer constant, there are an infinite number of function-signatures which would match. And there is currently no facility for "just" listing all candidates.

            Source https://stackoverflow.com/questions/70633075

            QUESTION

            Lua REPL that can auto disambiguate expresssions and statements?
            Asked 2022-Jan-02 at 11:30

            As it is known, Lua 5.3 handles interactive REPL to differentiate expressions and statements this way:

            In interactive mode, Lua repeatedly prompts and waits for a line. After reading a line, Lua first try to interpret the line as an expression. If it succeeds, it prints its value. Otherwise, it interprets the line as a statement. If you write an incomplete statement, the interpreter waits for its completion by issuing a different prompt.

            However, this is not the behavior I want. For example, I have some codes "f()" to evaluate, where f will through error, no matter what happens. it also change the internal state of lua. The above approach will cause bugs because it will change the internal state twice.

            So, I'd like to know, is there a way to implement a REPL that auto disambiguate expressions and statements? Do I have to add some syntax analysis to achieve this?

            ...

            ANSWER

            Answered 2022-Jan-02 at 11:30

            Interpreting code in Lua REPL is a two step process. First you convert the input to a runnable code with loadstring or a similar function. The code has been validated to be correct but didn’t run yet. Then you explicitly invoke it.

            fn = loadstring(“return 42”); fn()

            To summarize, parsing and validating code with loadstring() or a similar function is side effect free, as long as you don’t invoke the result.

            Source https://stackoverflow.com/questions/70555201

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install disambiguate

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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          • HTTPS

            https://github.com/AstraZeneca-NGS/disambiguate.git

          • CLI

            gh repo clone AstraZeneca-NGS/disambiguate

          • sshUrl

            git@github.com:AstraZeneca-NGS/disambiguate.git

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