Blacklist | Application for making ENCODE Blacklists | Genomics library

by Boyle-Lab C++ Version: v2.0 License: GPL-3.0

X-Ray Key Features Code Snippets(1)Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | Blacklist Summary

Blacklist is a C++ library typically used in Artificial Intelligence, Genomics applications. Blacklist has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Functional genomics assays based on high-throughput sequencing greatly expand our ability to understand the genome. Here, we define the ENCODE blacklist- a comprehensive set of regions in the human, mouse, worm, and fly genomes that have anomalous, unstructured, or high signal in next-generation sequencing experiments independent of cell line or experiment. The removal of the ENCODE blacklist is an essential quality measure when analyzing functional genomics data.

Support

Quality

Security

License

Reuse

Support

Blacklist has a low active ecosystem.

It has 207 star(s) with 31 fork(s). There are 7 watchers for this library.

It had no major release in the last 12 months.

There are 5 open issues and 30 have been closed. On average issues are closed in 115 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of Blacklist is v2.0

Quality

Blacklist has no bugs reported.

Security

Blacklist has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

Blacklist is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

Blacklist releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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Blacklist Key Features

No Key Features are available at this moment for Blacklist.

Blacklist Examples and Code Snippets

Blacklist

Python

Lines of Code : 24

License : No License

Copy

class BlacklistToken(db.Model):
    """
    Token Model for storing JWT tokens
    """
    __tablename__ = 'blacklist_tokens'

    id = db.Column(db.Integer, primary_key=True, autoincrement=True)
    token = db.Column(db.String(500), unique=True, nul

Community Discussions

Trending Discussions on Blacklist

Pip with broken connection: "connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='pypi.org', port=443): Read timed out."

ESLint Async pipes should not be negated

cannot deserialize the current JSON array c#

AssertionError [ERR_ASSERTION]

Discord.py: Blacklist Cog.listener flagging error: TypeError: 'str' object not callable

UnhandledPromiseRejectionWarning: Error: Request is already handled

Convert python script to airflow dag

Scanning lists more efficiently in python

How to set PTR Record on Azure App service

How to create a wildcard to deny all requests from all ips in AWS WAF

QUESTION

Pip with broken connection: "connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='pypi.org', port=443): Read timed out."

Asked 2021-Jun-15 at 10:17

I'm trying to install a package with pip on Ubuntu 18.04 as well as Ubuntu 20.04 using Anaconda. However, I end up with the following error message:

...

ANSWER

Answered 2021-Jan-21 at 18:24

I eventually scanned through this one below, that although it's for Windows it actually worked on Ubuntu linux too!!

Pip ReadTimeoutError in Windows 10

and the way to fix it is then simply disable ipv6 with the following commands, and done!

Source https://stackoverflow.com/questions/65833575

QUESTION

ESLint Async pipes should not be negated

Asked 2021-Jun-14 at 13:52

I'm using ESLint with Angular and I don't like having extra code like (observable | async) === (false | null | undefined) instead of just (observable | async). How do I disable that rule?

...

ANSWER

Answered 2021-Apr-01 at 17:13

add "@angular-eslint/template/no-negated-async": "off" to the html portion of the esLint rules section

Source https://stackoverflow.com/questions/66789429

QUESTION

cannot deserialize the current JSON array c#

Asked 2021-Jun-11 at 07:50

What's wrong with my classes?. I see array of objects as response:

...

ANSWER

Answered 2021-Jun-11 at 07:50

I assume that you:

Try to deserialize JSON array;
using dotnet 5 / using System.Text.Json;

you can easily deserialize JSON array with

Source https://stackoverflow.com/questions/67932405

QUESTION

AssertionError [ERR_ASSERTION]

Asked 2021-Jun-11 at 04:09

I have gulp file that is having issues with latest update to gulp 4 I am getting assertion errors (AssertionError [ERR_ASSERTION]: Task function must be specified) and it seems (from googling) to have to do with how tasks are defined, but not sure if this is the case here and what needs to change. Node: node -v v14.16.0

CLI version: 2.3.0 Local version: 4.0.2

NPM: 6.14.11 Here is the code

...

ANSWER

Answered 2021-Jun-11 at 04:09

So there are a few things wrong with your code.

gulp.task('styles', ['wiredep'], function() {

for example should be

gulp.task('styles', gulp.series('wiredep', function() { etc.

gulp.task only takes three arguments. You may have more places in your code like this.

gulp.watch([path.source + 'styles/**/*'], ['styles']); might actually be fine but lets be careful and make it a little more future-proof:

gulp.watch([path.source + 'styles/**/*'], gulp.series('styles'));

Etc. change all of these in your watch task.

With gulp.series and gulp.parallel you no longer need something like runSequence. So replace

Source https://stackoverflow.com/questions/67931002

QUESTION

Discord.py: Blacklist Cog.listener flagging error: TypeError: 'str' object not callable

Asked 2021-Jun-09 at 20:08

I have a command that blacklist words but it doesn't seem to be working. Flags error line 128, in on_message, msg = message.content() TypeError: 'str' object not callable

...

ANSWER

Answered 2021-Jun-09 at 20:08

It's because you're trying to use an attribute, .content, as a function. You can't call an attribute.

The correct way of getting a message's content is by just removing those brackets.

Source https://stackoverflow.com/questions/67911019

QUESTION

UnhandledPromiseRejectionWarning: Error: Request is already handled

Asked 2021-Jun-05 at 16:26

So i have this nodejs that was originaly used as api to crawl data using puppeteer from a website based on a schedule, now to check if there is a schedule i used a function that link to a model query and check if there are any schedule at the moment. It seems to work and i get the data, but when i was crawling the second article and the next there is always this error UnhandledPromiseRejectionWarning: Error: Request is already handled! and followed by UnhandledPromiseRejectionWarning: Unhandled promise rejection. This error originated either by throwing inside of an async function without a catch block, or by rejecting a promise which was not handled with .catch(). and it seems to take a lot of resource from the cpu and memory. So my question is, is there any blocking in my code or anything that could have done better.

this is my server.js

...

ANSWER

Answered 2021-Jun-05 at 16:26

I figured it out, i just used puppeteer cluster.

Source https://stackoverflow.com/questions/67815215

QUESTION

Convert python script to airflow dag

Asked 2021-Jun-03 at 17:10

I have identified the below script as being really useful for anyone running Amazon Redshift:

...

ANSWER

Answered 2021-Jun-03 at 17:10

How about creating a new custom operator? It should accept all the cli arguments and then you can pass them to code from existing script. Here is some rough draft of what I would do:

Source https://stackoverflow.com/questions/67783393

QUESTION

Scanning lists more efficiently in python

Asked 2021-Jun-02 at 08:17

I have some code, which works as intended, however takes about 4 and a half hours to run, I understand that there are about 50 billion calculations my poor pc needs to do but I thought it would be worth asking!

This code gets an image, and wants to find every possible region of 331*331 pixels in the given image, and find how many black pixels there are in each, I will use this data to create a heatmap of black pixel density, and also a list of all of the values found:

...

ANSWER

Answered 2021-May-26 at 18:12

Try to look into the map() function. It uses C to streamline iterations. You can speed up your for loops like this:

Source https://stackoverflow.com/questions/67710007

QUESTION

How to set PTR Record on Azure App service

Asked 2021-Jun-01 at 09:30

I was trying to add PTR Record to Azure App Service cause I have problem with our emails being blacklisted cause no PTR Record for IP.

I git info from MS that this is not possible directly. Is there any other way to use PTR record with App service? I found solution to create small VM with PublicIP, Reverse Proxy and add PTR Record there but for me this is really bad solution as this VM failing would cause site to be down.

Any ideas?

...

ANSWER

Answered 2021-Jun-01 at 09:30

Currently, there is no solution for setting PTR record on Azure App service.

Source https://stackoverflow.com/questions/67741034

QUESTION

How to create a wildcard to deny all requests from all ips in AWS WAF

Asked 2021-Jun-01 at 09:06

I got a microservice in an ECS instance in AWS behind a WAF, I want to create these rules:

Allow specific IPs (done)
Allow all connections from inside the VPN (done)
Deny all the other requests.

The first two IP set are created, but I can't make the last one to work. I tried creating the IP set with 0.0.0.0/0 and another combinations without success.

This is my code, I removed ipset 1 and 2 (that are working), this is the ipset 3:

...

ANSWER

Answered 2021-Jun-01 at 01:22

You can't block all addresses (CIDR /0). It is not supported. From docs:

AWS WAF supports all IPv4 and IPv6 CIDR ranges except for /0.

Instead, you can use network ACL to deny all traffic, or security groups.

Source https://stackoverflow.com/questions/67779762

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Blacklist

Clone a copy of the Blacklist repository and submodules:. Build bamtools API (please see bamtools documentation for more information) Note: bamtools requires zlib to be installed. The blacklist software relies on a certain directory structure relative to the executable to function properly. All input data tracks should sorted and indexed bam files.
Blacklist execuatable input/ - folder containing all bam and bam.bai files mappability/ - folder containing all uint8 Umap files

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: