Augustus | Genome annotation with AUGUSTUS | Genomics library

by Gaius-Augustus C++ Version: v3.5.0 License: No License

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | Augustus Summary

Augustus is a C++ library typically used in Artificial Intelligence, Genomics applications. Augustus has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

AUGUSTUS is a program to find genes and their structures in one or more genomes. More ...

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Quality

Security

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Support

Augustus has a low active ecosystem.

It has 223 star(s) with 103 fork(s). There are 17 watchers for this library.

It had no major release in the last 12 months.

There are 139 open issues and 117 have been closed. On average issues are closed in 98 days. There are 3 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of Augustus is v3.5.0

Quality

Augustus has no bugs reported.

Security

Augustus has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

Augustus does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

Augustus releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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Augustus Key Features

No Key Features are available at this moment for Augustus.

Augustus Examples and Code Snippets

No Code Snippets are available at this moment for Augustus.

Community Discussions

Trending Discussions on Augustus

Access all li elements between two specific heading elements

Pyspark read csv

Run my javascript code on wordpress pages

Blazor WebAssembly: localized strings fail to load when setting a different CurrentUICulture and CurrentCulture

Extract data using regex Dart/Flutter

Parse a txt file and extract specific part depending on list

Replace pattern from first column in file2 by pattern in second column in file2 within file1

Why do I have to click button twice before event fires?

How to get the setInterval function working?

locate several column with specific values in pandas

QUESTION

Access all li elements between two specific heading elements

Asked 2021-Feb-23 at 17:31

Problem Description:

I am looking for a way to access the li-elements between two specific heading-tags only (e.g.from 2nd h3 to 3rd h3 or from 3rd h3 to next h4) in order to create a table of historical events listed on https://de.wikipedia.org/wiki/1._Januar structured along the criteria mentioned in the headings. A major problem (for me ...) is that - other than the h1-heading - the subtitles of the lower levels have no className or id.

Sample of HTML:

...

ANSWER

Answered 2021-Feb-14 at 00:24

Instead of using loops, you can just copy and paste the range at once.

Source https://stackoverflow.com/questions/66190751

QUESTION

Pyspark read csv

Asked 2021-Feb-19 at 11:07

After read the csv, I'm getting an unexpected output:

...

ANSWER

Answered 2021-Feb-19 at 09:52

Use sep instead of delimiter:

Source https://stackoverflow.com/questions/66275123

QUESTION

Run my javascript code on wordpress pages

Asked 2021-Jan-03 at 22:49

In a question asked earlier on stackoverflow I came to a correct javascript code. I then implemented this on my wordpress page (see: specific page).

Although the javascript code is loaded in the head (below the js code), it is not activated as soon as I reach the webpage.

...

ANSWER

Answered 2021-Jan-03 at 22:49

When you put it in the header and run, those codes may not be applicable because the Dom is not rendered yet. You may want to try wrapping your codes in the load event.

Source https://stackoverflow.com/questions/65555629

QUESTION

Blazor WebAssembly: localized strings fail to load when setting a different CurrentUICulture and CurrentCulture

Asked 2020-Aug-26 at 00:31

I want to localize the strings in a Blazor WebAssembly app, but I want to keep the date and number notation fixed to en-US. The problem is that when I set DefaultThreadCurrentUICulture (which should control the localized strings) to something else than DefaultThreadCurrentCulture (which should control the date and number) the localized strings from the resx files are no longer found. If I set both to the same value (thus e.g. both en-US or both nl-BE), everything works as expected.

Does anyone know how I can solve this? Is this a bug or am I missing something? Below is a part of my test code with comments about which combinations of CurrentUICulture and CurrentCulture work or not work. I put this code right at the start in the Main method.

...

ANSWER

Answered 2020-Aug-26 at 00:31

I am pretty sure this is a bug that is being addressed in .net5.0-preview8 - which should be out this week, hopefully!

https://github.com/dotnet/aspnetcore/issues/24174

EDIT: It seems I was wrong about this fixing your issue - it doesn't. From quick testing using aspnetcore 5 preview 8, it seems the only time localization works is if both currentculture and currentuiculture match.

Source https://stackoverflow.com/questions/63530929

QUESTION

Extract data using regex Dart/Flutter

Asked 2020-Aug-10 at 20:56

I want to extract data from the following

...

ANSWER

Answered 2020-Aug-10 at 15:30

RegExp re = new RegExp("((?<=Sv-loon)([\\S\\s]*?)(?=Datum:))");

Source https://stackoverflow.com/questions/63342690

QUESTION

Parse a txt file and extract specific part depending on list

Asked 2020-Jul-03 at 12:09

I would need help in order to extract part of a txt.file such as

...

ANSWER

Answered 2020-Jul-03 at 11:41

You can use regular expressions (module re). You have to capture all the text after # protein sequence = [

Try this code (this is just begining):

Source https://stackoverflow.com/questions/62714581

QUESTION

Replace pattern from first column in file2 by pattern in second column in file2 within file1

Asked 2020-Jun-27 at 01:01

I have tried to work on a solution for the following: I have a .gff3 file for which I want to replace gene headers into a simplified name. Both the original gene headers and the new gene name are given in a separate file, with the original name in column 1 and the new name in column 2. How can I use sed (I think sed is most suitable here) to replace all occurences in the .gff3 file with the new shortened name in the second column?

Example lines .gff3 file:

...

ANSWER

Answered 2020-Jun-22 at 14:34

This does a full string match from after = to the end of -gene= on each line of .gff3 and should be orders of magnitude faster and more robust than what we had been doing previously since it only replaces the 1-3 strings actually found in each line of the original.gff3 file rather than trying to replace all 18,000+ strings that exist in the rename.txt file:

Source https://stackoverflow.com/questions/62428959

QUESTION

Why do I have to click button twice before event fires?

Asked 2020-Jun-26 at 11:24

A simple multiple choice quiz with one problem I can't solve. At first When I clicked the 'next question' button the next question and answers didn't show only when clicked a second time the next question and answers showed. When I placed runningQuestion++ above questions[runningQuestion].displayAnswers() like I did in the nextQuestion function the initial problem is solved but reappears after the last question when you are asked to try again. Only now when you click 'try again' now ofcourse it skips the first question.

...

ANSWER

Answered 2020-Jun-26 at 11:24

The problem with the current version is that you reset runningQuestion to 0, and when clicking on the button, you execute nextQuestion, which, as the name implies, goes to the next question (runningQuestion++).

I see 2 ways of solving this. Either the "easy" way, by resetting runningQuestion to -1 so that it goes to 0:

Source https://stackoverflow.com/questions/62590708

QUESTION

How to get the setInterval function working?

Asked 2020-May-14 at 17:22

For my school project I am trying to display a clock which refreshes hours/minutes/seconds in real time. i want to work with SetInterval or are it the wrong thoughts? Can anyone help me out?

...

ANSWER

Answered 2020-May-14 at 16:06

getActualFullDate() doesn't update the HTML, it just returns a string. The interval function needs to call .html().

Source https://stackoverflow.com/questions/61801761

QUESTION

locate several column with specific values in pandas

Asked 2020-May-06 at 11:45

Hel lo, I know how to use

...

ANSWER

Answered 2020-May-06 at 11:45

Here is necesary chain masks, not filtered rows, also are added () because priority of operators:

Source https://stackoverflow.com/questions/61634244

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Augustus

As a normal user, add the directory of the executables to the PATH environment variable, for example:.
You can install AUGUSTUS globally, if you have root privileges, for example:. Alternatively, you can exectue similar commands to those in the "install" section of the top-level Makefile to customize the global installation.

Support

Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008). Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics, 24(5), pages 637–644, doi: 10.1093/bioinformatics/btn013. For further references see docs/REFERENCES.md.

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