manta | Structural variant and indel caller | Genomics library

by Illumina C++ Version: v1.6.0 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | manta Summary

manta is a C++ library typically used in Artificial Intelligence, Genomics applications. manta has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

For manta code development and debugging details, see the [Manta developer guide][DeveloperGuide]. This includes details on Manta’s developement protocols, special build instructions, recommended workflows for investigating calls, and internal documentation details.

Support

Quality

Security

License

Reuse

Support

manta has a low active ecosystem.

It has 342 star(s) with 134 fork(s). There are 40 watchers for this library.

It had no major release in the last 12 months.

There are 120 open issues and 173 have been closed. On average issues are closed in 34 days. There are 4 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of manta is v1.6.0

Quality

manta has no bugs reported.

Security

manta has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

manta is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

manta releases are available to install and integrate.

Installation instructions are available. Examples and code snippets are not available.

Top functions reviewed by kandi - BETA

kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of manta

Get all kandi verified functions for this library.

manta Key Features

No Key Features are available at this moment for manta.

manta Examples and Code Snippets

No Code Snippets are available at this moment for manta.

Community Discussions

Trending Discussions on manta

checking if any of multiple substrings is contained in a string - Python

I'm lost with a Google Sheets function

Storing the results of a macro into a table

R: "read" a txt file from a URL

What is the difference in accessing Cloudflare website using ChromeDriver/Chrome in normal/headless mode through Selenium Python

Remove empty fields in json file

How to extend Android Chronometer?

how to find a value in array of objects with key value pairs

How to Check Website Content type in python

How to fix 416

QUESTION

checking if any of multiple substrings is contained in a string - Python

Asked 2021-Apr-15 at 09:56

I have a black list that contains banned substrings: I need to make an if statement that checks if ANY of the banned substrings are contained in given url. If it doesn't contain any of them, I want it to do A (and do it only once if any banned is present, not for each banned substring). If url contains one of the banned substrings I want it to do B.

...

ANSWER

Answered 2021-Apr-15 at 09:45

You should add a flag depending on which perform either A or B.

Source https://stackoverflow.com/questions/67105940

QUESTION

I'm lost with a Google Sheets function

Asked 2021-Mar-26 at 18:47

I have a column named "Trip", in which I have infos such as the hotel, country, and type of trip. The thing is these infos are hand typed, so sometimes instead of typing "HOTEL ABC", the person entering the infos simply enters "ABC", or event "HTL ABC". Also, ABC can also refer to a country.

What I want is to extract all hotel names on each cell. Here's the function I created, but I can't get it to work. (Y2 is the TRIP Column)

...

ANSWER

Answered 2021-Mar-26 at 18:47

You are missing semicolons before "CORAIL NOIR" and "LOHARANO" .
You need to remove the final semicolon after "FRIDAY ATTITUDE" because IFS expects all arguments after position 0 to be in pairs and the final semicolon makes Google Sheets think another set of arguments is coming.
You can help yourself out with future troubleshooting by spacing out your function better - eg the following will still work when pasted into Google Sheets:

Source https://stackoverflow.com/questions/66822096

QUESTION

Storing the results of a macro into a table

Asked 2020-Dec-27 at 22:20

I found a procedure in R that I want to iterate for different values.

The original procedure looks like this (runs completely in base R):

...

ANSWER

Answered 2020-Dec-27 at 22:19

1) Using the modified code in the question, before the first for insert this line to initialize mseDF:

Source https://stackoverflow.com/questions/65469644

QUESTION

R: "read" a txt file from a URL

Asked 2020-Dec-18 at 22:28

I am interested to see if it is possible to directly load (into R) txt file from a url instead of downloading it and then importing it.

I came across this post over here: Access a URL and read Data with R

Apparently it is possible to do this with csv files. Is it possible to do the same thing for txt files?

I tried to adapt the code from this stackoverflow post for the following website: https://mantas.info/wp/wp-content/uploads/simple_esn/MackeyGlass_t17.txt

...

ANSWER

Answered 2020-Dec-18 at 22:27

Try with data.table function fread() (one of the fastest functions for loading data):

Source https://stackoverflow.com/questions/65364664

QUESTION

What is the difference in accessing Cloudflare website using ChromeDriver/Chrome in normal/headless mode through Selenium Python

Asked 2020-May-30 at 13:11

I have a question about --headless mode in Python Selenium for Chrome.

Code

...

ANSWER

Answered 2019-Dec-04 at 11:59

I took your code, removed the optional arguments and added a few arguments to execute the test as follows:

Code Block:

Source https://stackoverflow.com/questions/59174899

QUESTION

Remove empty fields in json file

Asked 2020-Feb-16 at 22:52

I have this json file and I have to remove some null fields. I have posted my json file and also the json file that I am expecting. Can you help me what codes should I write for this to happen?

Here is my json file:

...

ANSWER

Answered 2020-Feb-16 at 18:39

You can use for-loop to iterate data["selection1"] and copy to new dictionary only elements which have reviews

Source https://stackoverflow.com/questions/60251482

QUESTION

How to extend Android Chronometer?

Asked 2019-Oct-20 at 22:21

I want to extend Chronometer class and add my code.

How I could do it? I tried, but I can't get Chronometer constructor with View field. I get an exception, it is obvious:

...

ANSWER

Answered 2019-Oct-20 at 22:19

Add this constructor:

Source https://stackoverflow.com/questions/58476371

QUESTION

how to find a value in array of objects with key value pairs

Asked 2019-Aug-29 at 05:31

I have an array of objects with key value pairs, I'd like to find the value base on the key I have.

Here is the array:

const baseColors = [{"WHITE":"rgb(255,255,255)"},{"BLACK":"rgb(0,0,0)"},{"DARK GRAY":"rgb(60,60,60)"},{"MEDIUM GRAY":"rgb(98,98,98)"},{"LIGHT GRAY":"rgb(185,185,185)"},{"POLARIS SQUEEZE":"rgb(242,255,0)"},{"SUNBURST":"rgb(254,227,49)"},{"PRO YELLOW":"rgb(253,214,20)"},{"YELLOW":"rgb(243,194,0)"},{"DEEP YELLOW":"rgb(241,169,0)"},{"ORANGE CRUSH":"rgb(254,134,29)"},{"TANGERINE":"rgb(255,102,0)"},{"ORANGE":"rgb(232,85,0)"},{"RACE ORANGE":"rgb(232,58,0)"},{"TERRA COTTA":"rgb(160,61,1)"},{"RUBY RED":"rgb(137,0,0)"},{"TOMATO RED":"rgb(176,29,5)"},{"LAVA RED":"rgb(182,32,7)"},{"POLARIS RED":"rgb(199,6,7)"},{"INTENSE RED":"rgb(223,37,37)"},{"BURGUNDY":"rgb(93,0,33)"},{"RASPBERRY":"rgb(118,5,66)"},{"HOT PINK":"rgb(170,19,118)"},{"PINK":"rgb(222,103,156)"},{"LIGHT PURPLE":"rgb(136,90,168)"},{"VIOLET":"rgb(72,0,144)"},{"PURPLE":"rgb(48,0,92)"},{"RETRO BLUE":"rgb(14,10,49)"},{"LIGHT NAVY":"rgb(10,23,51)"},{"YAMAHA BLUE":"rgb(0,8,102)"},{"SUMMIT BLUE":"rgb(6,28,89)"},{"VOODOO BLUE":"rgb(11,69,127)"},{"BLUE":"rgb(2,25,200)"},{"OCTANE BLUE":"rgb(1,157,232)"},{"ICE BLUE":"rgb(51,162,184)"},{"AQUA":"rgb(54,188,161)"},{"TEAL":"rgb(0,115,115)"},{"MANTA GREEN":"rgb(173,198,4)"},{"LIME GREEN":"rgb(146,199,1)"},{"KAWASAKI GREEN":"rgb(1,189,1)"},{"APPLE GREEN":"rgb(67,136,0)"},{"CAT GREEN":"rgb(0,117,17)"},{"GREEN":"rgb(1,102,28)"},{"FOREST GREEN":"rgb(0,53,26)"},{"ARMY GREEN":"rgb(48,62,9)"},{"BROWN":"rgb(52,27,23)"},{"TAN":"rgb(136,96,50)"},{"BEIGE":"rgb(218,190,152)"},{"SILVER METALLIC":"rgb(175,178,178)"},{"GOLD METALLIC":"rgb(148,110,44)"},{"COPPER METALLIC":"rgb(130,64,0)"}];

So I'd like to find the value for example like

...

ANSWER

Answered 2019-Aug-29 at 04:10

const baseColor1 = $("[name='color1']").val();
const modelColor1Object = baseLayerColors.find(colorObj => colorObj[baseColor1]);
const modelColor1Value = modelColor1Object[baseColor1];

Source https://stackoverflow.com/questions/57702831

QUESTION

How to Check Website Content type in python

Asked 2019-Aug-27 at 04:59

How to Check Website Content type in python

...

ANSWER

Answered 2019-Aug-27 at 04:59

if you don't specify that header, requests library will default to sending:

'content-type': 'text/html; charset=UTF-8'

... which should be fine for making an HTTP GET request to the URL specified.

Source https://stackoverflow.com/questions/57667740

QUESTION

How to fix 416

Asked 2019-Aug-26 at 08:19

Hi everyone I want to scrap all the names but when I run my code I'm getting this error:

...

ANSWER

Answered 2019-Aug-26 at 08:19

By default, scrapy work only with successful responses - if status codes are in the 200-300 range https://docs.scrapy.org/en/latest/topics/spider-middleware.html#module-scrapy.spidermiddlewares.httperror

For work with 416 response use

Source https://stackoverflow.com/questions/57648642

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install manta

For linux users, it is recommended to start from the most recent [binary distribution on the Manta releases page][releases], this distribution can be unpacked, moved to any convenient directory and tested by [running a small demo](docs/userGuide/installation.md#demo) included with the release distribution. Manta can also be installed and run on OS X. Please see the [installation instructions](docs/userGuide/installation.md) for full build and installation details of all supported cases.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: