fastp | An ultra-fast all-in-one FASTQ preprocessor | Genomics library

 by   OpenGene C++ Version: v0.23.4 License: MIT

kandi X-RAY | fastp Summary

kandi X-RAY | fastp Summary

fastp is a C++ library typically used in Artificial Intelligence, Genomics applications. fastp has no bugs, it has no vulnerabilities, it has a Permissive License and it has medium support. You can download it from GitHub.

A tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.

            kandi-support Support

              fastp has a medium active ecosystem.
              It has 1525 star(s) with 300 fork(s). There are 52 watchers for this library.
              There were 2 major release(s) in the last 12 months.
              There are 277 open issues and 169 have been closed. On average issues are closed in 56 days. There are 4 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of fastp is v0.23.4

            kandi-Quality Quality

              fastp has 0 bugs and 0 code smells.

            kandi-Security Security

              fastp has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              fastp code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              fastp is licensed under the MIT License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              fastp releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            fastp Key Features

            No Key Features are available at this moment for fastp.

            fastp Examples and Code Snippets

            No Code Snippets are available at this moment for fastp.

            Community Discussions


            Error stopping function after alert message is shown
            Asked 2021-Jun-03 at 21:21

            I'm developing a proxy service and everything works great. When you press the submit button, it has an onclick function. I also now have it detecting when adblock is enabled, and I don't want the funcion to go through if adblock is detected, (meaning I want it so the proxy won't actually start if you have adblock enabled, and I want the alert message to pop up ONLY when you press the button UNTIL you disable adblock.)

            If you have adblock, here's an example of what I'm looking for. ( On this website, if you have adblock enabled, you can't submit the form. Mine still goes through after you press "ok" on the alert box. In my javascript code I tried doing a "return false;" and also a "else" but nothing seems to work. I don't want the form to submit if you have adblock enabled.

            I want it so if adblock is enabled, it will show the alert box, and when you press "ok" I don't want it to still launch the proxy in the new tab. I want it to launch when adblock is disabled.

            Here's my code:



            Answered 2021-Jun-03 at 21:21

            In similar cases I usually use try...catch in while loop as track it with variable:



            Benchmark channel creation NextFlow
            Asked 2021-Feb-11 at 01:19

            I am performing a scatter-gather operation on NextFlow.

            It looks like the following:



            Answered 2021-Feb-11 at 01:19

            Although Nextflow can parse FASTQ files and split them into smaller files etc, generally it's better to pass off these operations to another process or set of processes, especially if your input FASTQ files are large. This is beneficial in two ways: (1) your main nextflow process doesn't need to work as hard, and (2) you get granular task process stats in your nextflow reports.

            The following example uses GNU split to split the input FASTQ files, and gathers the outputs using the groupTuple() operator and the groupKey() built-in to stream the collected values as soon as possible. You'll need to adapt for your non-gzipped inputs:


            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install fastp

            You can download it from GitHub.


            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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