bruno | Distributed Memory De Bruijn Graph Library | Genomics library

by ParBLiSS C++ Version: Current License: Apache-2.0

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | bruno Summary

bruno is a C++ library typically used in Artificial Intelligence, Genomics applications. bruno has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

Bruno is a library in the Parallel Bioinformatics Library for Short Sequences project (ParBLiSS). Bruno provides parallel de Bruijn graph construction, erroneous k-mer filtering, and chain compaction (initial contig generation) capabilities in distributed memory environments. Please take a look at our Wiki. THIS README IS A WORK IN PROGRESS. BUILD AND USAGE INSTRUCTIONS ARE TO FOLLOW.

Support

Quality

Security

License

Reuse

Support

bruno has a low active ecosystem.

It has 5 star(s) with 0 fork(s). There are 4 watchers for this library.

It had no major release in the last 6 months.

There are 2 open issues and 0 have been closed. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of bruno is current.

Quality

bruno has 0 bugs and 0 code smells.

Security

bruno has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

bruno code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

bruno is licensed under the Apache-2.0 License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

bruno releases are not available. You will need to build from source code and install.

It has 260 lines of code, 0 functions and 2 files.

It has low code complexity. Code complexity directly impacts maintainability of the code.

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bruno Key Features

No Key Features are available at this moment for bruno.

bruno Examples and Code Snippets

No Code Snippets are available at this moment for bruno.

Community Discussions

Trending Discussions on bruno

How to sort from specific values of string?

@Scheduled not updating my JSON values to FALSE

cannot access specific JSON response in Laravel blade view

MySQL Workbench - UPDATE statement using WHERE clause

How do you create an object from points, in order to be able to insert it into a GUI?

How to export bash variable with value as string with hyphen?

Looping unlimitedly because of csvreader

Shen tutorial example for typed function does not compile

DDD and many to many aggregate route relationship

Sort array of object by key

QUESTION

How to sort from specific values of string?

Asked 2022-Mar-27 at 17:25

I'm using pandas and my data frame goes like this:

...

ANSWER

Answered 2022-Mar-27 at 17:25

If I have understand what you want to do correctly, you want to sort_values() in the DataFrame by team name (therefore grouping them all together), then by goals and assists (in this order) with highest first.

You could do this with this line of code:

Source https://stackoverflow.com/questions/71638374

QUESTION

@Scheduled not updating my JSON values to FALSE

Asked 2022-Mar-19 at 19:39

I'm trying to set all the values of a column of my H2 bank to false at 1:00 PM, but I'm having difficulties doing that, the message is being printed on the console, but the votes remain as TRUE.

My table looks like this, I would like every day at 1:00PM the values of the VOTED field to be FALSE

ID EMAIL PASSWORD NAME VOTED 1 bruno@gmail.com $2a$10$j1Eic8Okp.IczSVQbU.ru.s.dXoxd1fdzWtK2os9oE9y9ZO8wvMx6 Bruno TRUE 2 james@gmail.com $2a$10$F/KLm5ULaNRVEL/K6MMeveZXr770G5cI3S7HZnEw.b7TZDENkCWBC James TRUE 3 robert@gmail.com $2a$10$uHZjSrroGBtRBB/V.norRuOcDVz42MXnm0/2yLPGpE3P5XtPRo7L6 Robert FALSE

This is the logic I'm using in my UserServices.java

Despite the project running, users remain as TRUE after the time determined in @Scheduled

...

ANSWER

Answered 2022-Mar-19 at 18:03

I think you need to re-update the user list after setVoted(false)

Source https://stackoverflow.com/questions/71540640

QUESTION

cannot access specific JSON response in Laravel blade view

Asked 2022-Mar-19 at 04:12

I have this JSON response that I get by using GuzzleHttp, this is my controller

...

ANSWER

Answered 2022-Mar-19 at 04:12

you have returned $news; before returning view.Also you are accessing object but returned array.Here is the complete code

Source https://stackoverflow.com/questions/71534724

QUESTION

MySQL Workbench - UPDATE statement using WHERE clause

Asked 2022-Mar-11 at 17:37

I'm trying to update a table called 'Rural' - column name 'NO2', with data from another table called 'new_no2' - column name 'NO2'. see the code below

...

ANSWER

Answered 2022-Mar-11 at 17:37

Use a sub query:

Source https://stackoverflow.com/questions/71442320

QUESTION

How do you create an object from points, in order to be able to insert it into a GUI?

Asked 2022-Mar-03 at 09:58

I am currently following Bruno Simons Three.js journey, in the section regarding Mixing Html with WebGl, in the tutorial you are essentially trying to pin a text box to a 3D model. I have the GUI imported and ready but I'm finding it hard to understand what it is I need to 'gui.add(...)' to be able to tweak the position of the text in the GUI.

HTML

...

ANSWER

Answered 2022-Mar-02 at 15:42

Take a look at these examples on Particle Systems using points:

Points Billboards

Interactive Points

Instead of using points, you can map an image to the point. Take a look at this amazing particle system for effects, which actually maps an image of the effect if you see the code.

So, to recap, you would want to map an image to your point(s). Here is a great tutorial to get you started.

Good luck!

Source https://stackoverflow.com/questions/71311353

QUESTION

How to export bash variable with value as string with hyphen?

Asked 2022-Feb-24 at 18:09

I'm running in a simple problem, cannot export a string value with hyphens in bash variables. Here is what's happening:

.env

...

ANSWER

Answered 2022-Feb-24 at 17:58

First assignment (NAME_0) is invalid since the backticks imply that you want to run a command Bruno with arguments - and Souto.

Not sure why you don't just source the file and then manually export the variables (you already know the names - per the echo calls - so go ahead and export, too), eg:

Source https://stackoverflow.com/questions/71256005

QUESTION

Looping unlimitedly because of csvreader

Asked 2022-Feb-15 at 16:36

Hey there I'm making a game where you have to guess the name of a song with only the first letters and if you get it wrong once you get more letters twice is game over. (Not finished) But I have run into where my reading of my song csv file doesn't end and loops forever. I have had to end it using the ^C keyboard interrupt. The code works sometimes other times it doesn't.

...

ANSWER

Answered 2022-Jan-17 at 22:58

This is actually due to the behaviour of the csvreader class. Once you have iterated over it once, there is nothing left inside it and so attempting to iterate over it again will yield an empty list. What you need to do is construct a list by iterating over the output and then not use the object again, as it has become essentially useless.

Source https://stackoverflow.com/questions/70746286

QUESTION

Shen tutorial example for typed function does not compile

Asked 2022-Feb-01 at 08:42

I just discovered the Shen language and so I installed it under my debian linux as an SBCL build and started to work through the Shen in 15 minutes tutorial.

I made it up to the point, where you turn on type checking, using

Shen, copyright (C) 2010-2015 Mark Tarver
www.shenlanguage.org, Shen 22.2
running under Common Lisp, implementation: SBCL
port 3.0.3 ported by Mark Tarver, Robert Koeninger and Bruno Deferrari

...

ANSWER

Answered 2022-Feb-01 at 08:42

The rendering from the style sheet has missed {}s.

Source https://stackoverflow.com/questions/70912198

QUESTION

DDD and many to many aggregate route relationship

Asked 2022-Jan-31 at 05:01

I am new to DDD and I am strugling with the concept of aggregate routes and it's implementation in ASP .NET Core.

Basicaly, I have two aggregate routes (AR):

User
Group

Where there can be a group with multiple users and each of it's user can belong to many different groups.

If I correctly understand it, the rule relationships aggregate routes are following:

aggregate route should be serializable (no circle relationship)
aggregate route must not have navigation property pointing to another aggregate route

The fact, that one AR should not have navigation property to another means, that I have to connect them in some kind of different way, for example with ValueObject.

ValueObject:UserToGroup (can't have navigation properties cause of serializability)

GUID UserId
GUID GroupId

AR User:

GUID Id
ICOLLECTION< UserToGroup > Groups

AR Group

GUID Id
ICOLLECTION< UserToGroup > Users

With this setup I managed to get everything according to the rules. But one unexplained question arises. How do I query for all Users from a Group?? I could for example do this (with LINQ): var ids = group.Users.Select(g => g.UserId) var usersFromGroup = userRepository.FetchByIds(ids)

But this seems kind of stupid, I felling like I am basically killing one of the EF best features, navigation properties...

Any suggestions how to implement this in some kind of better way??

Thank you so much for your response.

Bruno

...

ANSWER

Answered 2022-Jan-31 at 05:01

My recommendation would be to never query the domain model.

There may be a few instances where the complete data you need in a query would be available/surfaced in a particular instance of a domain object (aggregate root). But this more-often-than-not is not the case.

Queries should be a specific concern and be as close to the data store as possible. Typically the data is either returned in some low-level data structure such as a DataRow or perhaps a read model (data transfer object). A domain object should never cross a wire (well, that's my take on it).

For querying I would use an implementation of an ISomethingQuery where my domain interaction would be through the ISomethingRepository. In this way you can stay away from navigation properties and oddities such as "lazy-loading". You can be specific with the data you need.

The above structure usually leads to a situation where an ORM doesn't necessarily add much value but YMMV.

Source https://stackoverflow.com/questions/70918259

QUESTION

Sort array of object by key

Asked 2022-Jan-25 at 21:40

So I have this array of objects

...

ANSWER

Answered 2022-Jan-25 at 21:39

The outermost array is useless here. I would change your data structure to an object with key-values:

Source https://stackoverflow.com/questions/70855919

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install bruno

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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