KAT | mer Analysis Toolkit contains a number of tools | Genomics library

 by   TGAC C++ Version: Release-2.4.1 License: GPL-3.0

kandi X-RAY | KAT Summary

kandi X-RAY | KAT Summary

KAT is a C++ library typically used in Artificial Intelligence, Genomics applications. KAT has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT:. In addition, KAT contains a python script for analysing the mathematical distributions present in the K-mer spectra in order to determine how much content is present in each peak. This README only contains some brief details of how to install and use KAT. For more extensive documentation please visit:
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            kandi-support Support

              KAT has a low active ecosystem.
              It has 171 star(s) with 50 fork(s). There are 22 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 30 open issues and 116 have been closed. On average issues are closed in 488 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of KAT is Release-2.4.1

            kandi-Quality Quality

              KAT has 0 bugs and 0 code smells.

            kandi-Security Security

              KAT has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              KAT code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              KAT is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              KAT releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of KAT
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            KAT Key Features

            No Key Features are available at this moment for KAT.

            KAT Examples and Code Snippets

            No Code Snippets are available at this moment for KAT.

            Community Discussions

            QUESTION

            Reverse the d3-hierarchy (d3-tree) graph to left side to show downstream as well
            Asked 2022-Apr-17 at 13:52

            I have two sets of data one for upstream and one for downstream. Both upstream and downstream have same master node of John.

            Upstream data

            ...

            ANSWER

            Answered 2022-Apr-17 at 13:25

            I've adapted my answer to this question so it suits your data structure.

            This method has key steps:

            1. Remember that for a horizontal layout you flip x and y...
            2. Compute both tree layouts for upstream and downstream
            3. Make the root nodes have the same x and y
            4. Re-compute the y coordinate for every node such that the root is in the center and the downsteam branches work leftward and the upstream branches work right-ward.
            5. Draw both trees

            If you skip step 3 then you end up with this (where red is upstream and green is downstream):

            So to flip this around so that the downstream tree is in the left-hand side and the upstream tree is on the right-hand side (and the root is centered) :

            • We need to halve the y coordinate (which is it's x) of the upstream node and add half of the innerWidth. For the root this puts in the centre, but for the descendants it puts them proportionally on the right hand side:

            Source https://stackoverflow.com/questions/71900796

            QUESTION

            Rank the equal values of a dataset
            Asked 2022-Mar-28 at 16:37

            I'm new to programming in sas and I had a question regarding this topic.

            Tengo una tabla de entrada así

            ...

            ANSWER

            Answered 2022-Mar-28 at 16:37

            Use a data step with by group processing instead.

            Source https://stackoverflow.com/questions/71649460

            QUESTION

            How can I select the variable of inside of script tag as JSON value?
            Asked 2022-Mar-22 at 08:31

            https://www.canparkavm.com.tr/tr/markalar

            As i said at title, how can i access/convert JavaScript variable as JSON value on Python using the BeautifulSoup and requests libraries?

            I tried this topic for solve my problem but did not worked actually: Extract JSON from HTML Script tag with BeautifulSoup in Python

            ...

            ANSWER

            Answered 2022-Mar-22 at 03:16

            You need to find a suitable regex pattern to grab that content. One such is as follows:

            Source https://stackoverflow.com/questions/71566035

            QUESTION

            Matching the column values to the row values and write in the new column
            Asked 2022-Mar-15 at 06:12

            My first dataframe looks like this:

            df1:

            ...

            ANSWER

            Answered 2022-Mar-15 at 06:12

            QUESTION

            How to plot R's vegan::procrustes using Python (SciPy, NumPy, and Matplotlib)?
            Asked 2022-Mar-08 at 15:36

            I'm following the vegan tutorial on procrustes analysis:

            https://www.rdocumentation.org/packages/vegan/versions/2.4-2/topics/procrustes

            ...

            ANSWER

            Answered 2022-Jan-27 at 03:09

            It's not exactly the same, but I think it's pretty close.

            I brought the varespec data into Python for this. Then tried to mimic the actions that the vegan package (and your code) took. Along those lines, I stuck to the object names you used (for the most part).

            There has to be an easier way to do this.

            Source https://stackoverflow.com/questions/70870829

            QUESTION

            Diff() incompatable in nlsLM package?
            Asked 2022-Feb-03 at 15:01

            Question: Thank you in advance! does nlsLM not work with diff? I am simply trying to do g*(p[i]-p[i-1])/(x[i]-x[i-1]) and use nlsLM to find the value of fitting parameter g that can fit y I use diff without nlsLM as follows,

            ...

            ANSWER

            Answered 2022-Feb-03 at 15:01

            We assume you are interested in the following least squares model where n is nrow(df)

            Source https://stackoverflow.com/questions/70950172

            QUESTION

            python conditional dictionary and replace
            Asked 2022-Jan-30 at 18:25

            I have a conditional dict, when a string is recognized thorugh a function, it returns the key of that dictionary.

            The dict is "myDict", which will be use together with the list "lookup", find a word that exists in it, and return the dictionary key for that list, adding it to the end of that name.

            My code:

            ...

            ANSWER

            Answered 2022-Jan-30 at 18:25

            I changed your code.

            I added a split of the lookup string.

            Source https://stackoverflow.com/questions/70917556

            QUESTION

            How to not add an item's price when it is out of stock?
            Asked 2022-Jan-24 at 20:10

            The Product class has been defined.

            ...

            ANSWER

            Answered 2022-Jan-24 at 08:41

            In your specific case, it seems that you can simply return 0 when the item is out of stock, as it won't change the total cost.

            Source https://stackoverflow.com/questions/70830517

            QUESTION

            OOP Python converting list of strings into a list of ShoppingItem objects and assign the list into the self.items_list variable
            Asked 2022-Jan-23 at 18:18

            I have defined a class named ShoppingItem.

            ...

            ANSWER

            Answered 2022-Jan-23 at 17:57

            Your list_of_str will contain all the data in a comma-separated-value format, and the data of each item will be separated by a new line.

            You can loop through each item in the list_of_str then extract the values using .split(',') method. This will give you code, desc, price, quant (in this particular sequence)

            Then you need to push the object of ShoppingItem in the item_list for a particular item. You can do so by creating a new object ShoppingItem(code=code, description=desc, price=price, quantity=quant) and then appending it to the item_list.

            so the code will look like this:

            Source https://stackoverflow.com/questions/70824822

            QUESTION

            Parse nested map from a YAML document
            Asked 2021-Dec-17 at 18:26

            I am having trouble with (what I believe to be) a simple issue. I am trying to create a CLI using commando, and this CLI will read a configuration yaml, and then do stuff. However, I am stuck at the parsing of the config.yaml The following is my code:

            ...

            ANSWER

            Answered 2021-Dec-17 at 16:34

            Hostname should be exported, i.e. capitalized

            Source https://stackoverflow.com/questions/70395623

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install KAT

            If you have brew installed on your system you should be able to install a recent version of KAT by simply typing:.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/TGAC/KAT.git

          • CLI

            gh repo clone TGAC/KAT

          • sshUrl

            git@github.com:TGAC/KAT.git

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