KAT | mer Analysis Toolkit contains a number of tools | Genomics library
kandi X-RAY | KAT Summary
kandi X-RAY | KAT Summary
KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts. The following tools are currently available in KAT:. In addition, KAT contains a python script for analysing the mathematical distributions present in the K-mer spectra in order to determine how much content is present in each peak. This README only contains some brief details of how to install and use KAT. For more extensive documentation please visit:
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QUESTION
I have two sets of data one for upstream and one for downstream. Both upstream and downstream have same master node of John.
Upstream data
...ANSWER
Answered 2022-Apr-17 at 13:25I've adapted my answer to this question so it suits your data structure.
This method has key steps:
- Remember that for a horizontal layout you flip
x
andy
... - Compute both tree layouts for upstream and downstream
- Make the root nodes have the same
x
andy
- Re-compute the
y
coordinate for every node such that the root is in the center and the downsteam branches work leftward and the upstream branches work right-ward. - Draw both trees
If you skip step 3 then you end up with this (where red is upstream and green is downstream):
So to flip this around so that the downstream tree is in the left-hand side and the upstream tree is on the right-hand side (and the root is centered) :
- We need to halve the
y
coordinate (which is it'sx
) of the upstream node and add half of theinnerWidth
. For the root this puts in the centre, but for the descendants it puts them proportionally on the right hand side:
QUESTION
I'm new to programming in sas and I had a question regarding this topic.
Tengo una tabla de entrada así
...ANSWER
Answered 2022-Mar-28 at 16:37Use a data step with by
group processing instead.
QUESTION
https://www.canparkavm.com.tr/tr/markalar
As i said at title, how can i access/convert JavaScript variable as JSON value on Python using the BeautifulSoup
and requests
libraries?
I tried this topic for solve my problem but did not worked actually: Extract JSON from HTML Script tag with BeautifulSoup in Python
...ANSWER
Answered 2022-Mar-22 at 03:16You need to find a suitable regex pattern to grab that content. One such is as follows:
QUESTION
My first dataframe looks like this:
df1:
...ANSWER
Answered 2022-Mar-15 at 06:12Use DataFrame.join
with DataFrame.stack
:
QUESTION
I'm following the vegan tutorial on procrustes analysis:
https://www.rdocumentation.org/packages/vegan/versions/2.4-2/topics/procrustes
...ANSWER
Answered 2022-Jan-27 at 03:09It's not exactly the same, but I think it's pretty close.
I brought the varespec
data into Python for this. Then tried to mimic the actions that the vegan
package (and your code) took. Along those lines, I stuck to the object names you used (for the most part).
There has to be an easier way to do this.
QUESTION
Question: Thank you in advance! does nlsLM
not work with diff
? I am simply trying to do
g*(p[i]-p[i-1])/(x[i]-x[i-1])
and use nlsLM
to find the value of fitting parameter g that can fit y
I use diff
without nlsLM
as follows,
ANSWER
Answered 2022-Feb-03 at 15:01We assume you are interested in the following least squares model where n is nrow(df)
QUESTION
I have a conditional dict, when a string is recognized thorugh a function, it returns the key of that dictionary.
The dict is "myDict", which will be use together with the list "lookup", find a word that exists in it, and return the dictionary key for that list, adding it to the end of that name.
My code:
...ANSWER
Answered 2022-Jan-30 at 18:25I changed your code.
I added a split of the lookup string.
QUESTION
The Product
class has been defined.
ANSWER
Answered 2022-Jan-24 at 08:41In your specific case, it seems that you can simply return 0
when the item is out of stock, as it won't change the total cost.
QUESTION
I have defined a class named ShoppingItem
.
ANSWER
Answered 2022-Jan-23 at 17:57Your list_of_str
will contain all the data in a comma-separated-value format, and the data of each item will be separated by a new line.
You can loop through each item in the list_of_str
then extract the values using .split(',')
method. This will give you code, desc, price, quant
(in this particular sequence)
Then you need to push the object of ShoppingItem
in the item_list
for a particular item. You can do so by creating a new object ShoppingItem(code=code, description=desc, price=price, quantity=quant)
and then appending it to the item_list
.
so the code will look like this:
QUESTION
I am having trouble with (what I believe to be) a simple issue. I am trying to create a CLI using commando, and this CLI will read a configuration yaml, and then do stuff. However, I am stuck at the parsing of the config.yaml The following is my code:
...ANSWER
Answered 2021-Dec-17 at 16:34Hostname should be exported, i.e. capitalized
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