spades | SPAdes Genome Assembler | Genomics library

 by   ablab C++ Version: splitter-paper License: No License

kandi X-RAY | spades Summary

kandi X-RAY | spades Summary

spades is a C++ library typically used in Artificial Intelligence, Genomics applications. spades has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

[contributor covenant] spades 3.15.4 manual. # about spades. spades - st. petersburg genome assembler - is an assembly toolkit containing various assembly pipelines. this manual will help you to install and run spades. spades version 3.15.4 was released under gplv2 on february 1, 2021 and can be downloaded from the latest spades paper describing various pipelines in a protocol format is available [here] ## supported data types. the current version of spades works with illumina or iontorrent reads and is capable of providing hybrid assemblies using
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            kandi-support Support

              spades has a low active ecosystem.
              It has 561 star(s) with 125 fork(s). There are 33 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 179 open issues and 792 have been closed. On average issues are closed in 6 days. There are 2 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of spades is splitter-paper

            kandi-Quality Quality

              spades has 0 bugs and 0 code smells.

            kandi-Security Security

              spades has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              spades code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              spades does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              spades releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.
              It has 57159 lines of code, 2702 functions and 370 files.
              It has high code complexity. Code complexity directly impacts maintainability of the code.

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            spades Key Features

            No Key Features are available at this moment for spades.

            spades Examples and Code Snippets

            No Code Snippets are available at this moment for spades.

            Community Discussions

            QUESTION

            Relationship between classes and header files
            Asked 2022-Apr-03 at 18:58

            I'm trying to learn how to use classes in C++. This is my file structure.

            main.cpp (sueca.cpp)

            ...

            ANSWER

            Answered 2022-Apr-02 at 21:16

            You may need to step back in your book a bit, but I'll explain a little bit.

            Include (.h) files typically exist so that you can have 10 .cpp files that make use of the declared class. This is where you put class Foo { ... } stuff. Then anyone who wants to use Foo can include the .h file.

            The .cpp files are where you implement the class. I think you understand this.

            When you compile, you compile each of the .cpp's and then link them together. Or you can just do this:

            Source https://stackoverflow.com/questions/71720495

            QUESTION

            Need help to run an if statement inside an object to change that objects attributes (JAVA)
            Asked 2022-Mar-11 at 00:40

            Im not extremely high level at this and this is my first time really working with objects and classes. I am trying to make a card game and want to color the card's suit name either red or black with the Java color code things. Each card is its own object, with a suit and a number value. Heres the "Card" class:

            ...

            ANSWER

            Answered 2022-Mar-11 at 00:40

            There is a data type named Color, you might want to try setting Color cardColor = Color.yourColor and then using this value directly as your color with cardColor.

            EDIT to include solution:

            Source https://stackoverflow.com/questions/71402125

            QUESTION

            list all available symbols in R
            Asked 2022-Feb-27 at 18:45

            The following code from Plot a heart in R gives me how to draw hearts, clubs, spaces, and diamonds in R.

            ...

            ANSWER

            Answered 2022-Feb-27 at 18:45

            From ?symbol,

            The symbol font uses Adobe Symbol encoding

            You can find tables of that in several places. When I searched, one of the top results is hosted at R-Core memeber Paul Murrell's page at the Auckland Statistics Dept.

            Source https://stackoverflow.com/questions/71287107

            QUESTION

            Can Sphinx replace a token with a character?
            Asked 2022-Feb-21 at 15:26

            I am writing some documentation on card games using Sphinx and Markdown. I am generating the suit images in this way

            ...

            ANSWER

            Answered 2022-Feb-21 at 15:26

            I have got around this by writing my own post processor

            I have created my own script makehtml which looks for a file postprocess.py in the source directory and if it exists, it runs it

            Source https://stackoverflow.com/questions/71205665

            QUESTION

            How to automate accept cookies pop-up from java app using Selenium
            Asked 2022-Feb-14 at 20:22

            The app is going to load the system default browser, load a special website, and then login automatically

            ...

            ANSWER

            Answered 2022-Feb-14 at 20:22

            To click() on the element you need to induce WebDriverWait for the elementToBeClickable() and you can use either of the following locator strategies:

            • cssSelector:

            Source https://stackoverflow.com/questions/71117723

            QUESTION

            Does #id override the :hover change?
            Asked 2022-Feb-14 at 07:43

            I've seen different similar answers but none with the level of nesting I'm dealing with. I have two sets of buttons, circular ones and rectangular ones that I want the background to change to white on hover. The only thing I have been able to successfully change is the text color for the rectangular ones.

            I previously had the button styles inline and thought that was the issue. Guess not :/

            Does the ID override the :hover change? And if so do I need to reformat all of my buttons? Thank you!

            (previous code solutions involve jquery and I have no knowledge of it whatsoever)

            ...

            ANSWER

            Answered 2022-Feb-14 at 07:43

            Question - Does the ID override the :hover change?

            Answer - The style rule for a:hover will override the paragraph as long as it is written in the CSS after the rule for p or #id. The problem is that the selector handling your :hover behavior has a lower Specificity than the rule for the default behavior (p#id selector).

            Question - If so do I need to reformat all of my buttons?

            Answer - No, you don't need to reformat all the buttons as you can use !important on the button:hover in the CSS file.

            Source https://stackoverflow.com/questions/71097600

            QUESTION

            How can have springdoc-openapi use the @JsonValue enum format without changing toString?
            Asked 2022-Jan-07 at 15:09

            I have a Spring Boot application using springdoc-openapi to generate Swagger API documentation for my controllers. One of the enums used in the JSON request/response has a different JSON representation than its value/toString(). This is achieved using the Jackson @JsonValue annotation:

            ...

            ANSWER

            Answered 2021-Aug-11 at 18:49

            One solution is to replace the @JsonValue implementation with @JsonProperty:

            Source https://stackoverflow.com/questions/68747036

            QUESTION

            Array functions 'push' and 'splice' Javascript
            Asked 2021-Dec-26 at 21:13

            1 of spades,1 of diamonds,1 of clubs,1 of hearts,2 of spades,2 of diamonds,2 of clubs,2 of hearts,3 of spades,3 of diamonds,3 of clubs,3 of hearts,4 of spades,4 of diamonds,4 of clubs,4 of hearts,5 of spades,5 of diamonds,5 of clubs,5 of hearts,6 of spades,6 of diamonds,6 of clubs,6 of hearts,7 of spades,7 of diamonds,7 of clubs,7 of hearts,8 of spades,8 of diamonds,8 of clubs,8 of hearts,9 of spades,9 of diamonds,9 of clubs,9 of hearts,10 of spades,10 of diamonds,10 of clubs,10 of hearts

            ,,,

            [This is what the program returns]

            I'm trying to make a program in JavaScript that allows someone to play poker. I am using the ProcessingJS terminal in Khan Academy. Below is my full program so far. What it's supposed to do is make an array called deck which includes the names of all the cards (not including the face cards) in a deck of cards. That part of the program works. The next part attempts to make a new array called current that is an exact copy of deck. It then tries to print out current, and it does so successfully.

            The last for loop is what is causing the problem. It tries to take a random card from current and copy it to another array called player which is supposed to be the player's hand. It then tries to remove that card from the array current.

            However, when it tries to print out the array player, all it prints is three commas. I have no idea what the issue is and I have looked at many websites that talk about push and splice. I really have no idea what is wrong.

            Again, I want the program to display the player's hand. Thank you for your help.

            ...

            ANSWER

            Answered 2021-Dec-26 at 21:07

            Why not just simplify this without using splice?

            From what I understand, you're drawing the card using random. So, just push that card to the players hand with player.push(current[y]).

            Also, when you call current.splice(y), I don't think you're deleting just the card that was drawn. That deletes every card in the deck after the index y. Change this to current.splice(y, 1).

            Source https://stackoverflow.com/questions/70489684

            QUESTION

            Implementing JsonSerializable by a Pure Enum
            Asked 2021-Nov-01 at 15:28

            According to the PHP manual

            If a Pure Enum is serialized to JSON, an error will be thrown. If a Backed Enum is serialized to JSON, it will be represented by its value scalar only, in the appropriate type. The behavior of both may be overridden by implementing JsonSerializable

            Let's try to implement JsonSerializable

            ...

            ANSWER

            Answered 2021-Nov-01 at 15:28

            In an enum every case is an object instance of that enum. That means JsonSerializable is implemented by each one of them. Suit::cases() will return a packed array of all cases in an enumeration (a.k.a objects) so jsonSerialize method will be called on each one of them hence the duplicated arrays.

            How to control each case in an enum during serialization?

            We can simply use a match expression

            Source https://stackoverflow.com/questions/69799102

            QUESTION

            Deleting background shape outline and creating column space (CSS)
            Asked 2021-Oct-18 at 19:57

            I currently have this on my screen:

            I am struggling to achieve the following: 1) delete the black shape outline in the background (you can see it between cards), and 2) create a white gap between each pair of adjacent cards.

            Does anyone have any ideas on how to achieve this? Thank you very much!

            I am pasting the code below:

            HTML:

            ...

            ANSWER

            Answered 2021-Oct-18 at 19:54

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install spades

            You can download it from GitHub.

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