snap | Scalable Nucleotide Alignment Program | Genomics library

 by   amplab C++ Version: v2.0.2 License: Apache-2.0

kandi X-RAY | snap Summary

kandi X-RAY | snap Summary

snap is a C++ library typically used in Artificial Intelligence, Genomics applications. snap has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

SNAP is a fast and accurate aligner for short DNA reads. It is optimized for modern read lengths of 100 bases or higher, and takes advantage of these reads to align data quickly through a hash-based indexing scheme. It also includes support for sorting, marking duplicates and indexing its results, eliminating the need for several pipeline stages used by other aligners.
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            kandi-support Support

              snap has a low active ecosystem.
              It has 266 star(s) with 69 fork(s). There are 45 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 26 open issues and 103 have been closed. On average issues are closed in 311 days. There are 9 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of snap is v2.0.2

            kandi-Quality Quality

              snap has no bugs reported.

            kandi-Security Security

              snap has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              snap is licensed under the Apache-2.0 License. This license is Permissive.
              Permissive licenses have the least restrictions, and you can use them in most projects.

            kandi-Reuse Reuse

              snap releases are available to install and integrate.
              Installation instructions are available. Examples and code snippets are not available.

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            snap Key Features

            No Key Features are available at this moment for snap.

            snap Examples and Code Snippets

            No Code Snippets are available at this moment for snap.

            Community Discussions

            QUESTION

            Angular - stop scroll snapping to the top on subscription timer
            Asked 2021-Jun-15 at 08:26

            I have a self updating list of orders that is scrollable. This is the parent component, where list is updated on a timer of 2 minutes, setup like so:

            ...

            ANSWER

            Answered 2021-Jun-11 at 13:10

            You could try using element.scrollTop to save the position of the scrollbar and then use the saved value to set the scrollTop property to where it was when the timed function is called.

            (https://developer.mozilla.org/en-US/docs/Web/API/Element/scrollTop?retiredLocale=it - https://www.javascripttutorial.net/dom/css/get-and-set-scroll-position-of-an-element/)

            Source https://stackoverflow.com/questions/67890780

            QUESTION

            Need help refactoring my firebase function
            Asked 2021-Jun-15 at 08:17

            I have a firebase function that sends an email, updates a record on another collection and creates an account on another API service when a new user is created. The whole operation runs for 2 minutes but I think it can be optimized further. I'm also new to async await so I don't really know how to use it properly.

            ...

            ANSWER

            Answered 2021-Jun-15 at 08:17

            If your functions are declared async, you need to use the await keyword when calling them. And consequently you need to declare the Cloud Function itself as async.

            So the following should do the trick:

            Source https://stackoverflow.com/questions/67982165

            QUESTION

            Angular and ASP.NET Core MVC: "Uncaught SyntaxError: Unexpected token '<'" for index file references when deployed
            Asked 2021-Jun-15 at 06:41

            I have an application using ASP.NET Core MVC and an Angular UI framework.

            I can run the application in IIS Express Development Environment without issue. When I switch to the IIS Express Production environment or deploy to an IIS host, my index referenced files cannot be read showing a browser error:

            Uncaught SyntaxError: Unexpected token '<'

            These pages look like they are loading the index page as opposed to the .js or .css files.

            Here is a snippet of the underlying runtime.js as it should be loaded into browser, it is not loaded with index.html.

            ...

            ANSWER

            Answered 2021-Jun-14 at 14:39

            QUESTION

            Flutter: The method 'map' was called on null. | Adding API Response into datatable row
            Asked 2021-Jun-15 at 06:28

            I am trying to add api response data into datatable row.

            My api response is look like this

            ...

            ANSWER

            Answered 2021-Jun-15 at 06:28

            You should use the FutureBuilder widget to update your user interface when the data is available. The code you provided attempts to build the widgets before the data is received. This causes the _historyList to still be null.

            Source https://stackoverflow.com/questions/67980519

            QUESTION

            Converting component code to hooks in react native
            Asked 2021-Jun-14 at 16:18

            Am having trouble converting this piece of code to react native hooks code. Am following a tutorial which has its code on RN state component, am writing mine in RN hooks, but I got stocked. I know am not doing something right in the onFaceDetected also, but I can't just figure it out to write the right hook code for this code below. Please I need help with right hook code for this piece of code below. Thank you very much in advance.

            ...

            ANSWER

            Answered 2021-Jun-14 at 16:18

            QUESTION

            Service Starts, but The Program does not Run
            Asked 2021-Jun-14 at 06:20

            We've created a new hosted service using .NET Core 3.1 and the WorkerService template.

            We want to run this service as a "Windows Service".

            If I run the program manually using a Powershell shell, it runs fine with no problems.

            So I then added it as a windows service. To do this, I followed these steps:

            1. Added the Microsoft.Extensions.Hosting.WindowsServices package

            2. Added the following to CreateHostBuilder:

              ...

            ANSWER

            Answered 2021-Jun-14 at 06:20

            As per comment on issue 36065, when a .NET Core 3.1 worker service runs as a windows service "Directory.GetCurrentDirectory() will point to %WINDIR%\system32". Therefore to get the current directory, you could use some reflection and something like:

            Source https://stackoverflow.com/questions/67964667

            QUESTION

            How to get the scroll amount if a div has the scroll
            Asked 2021-Jun-13 at 17:06

            So the page doesn't have scroll property. A div has elements inside it with the scroll property. I m looking for a pageYOffset equivalent for a div to know its scrolled length.

            ...

            ANSWER

            Answered 2021-Jun-13 at 17:01

            parent.scrollTop is what you need.

            Source https://stackoverflow.com/questions/67960714

            QUESTION

            Running valgrind on NVIDIA Jetson gives no leak source information
            Asked 2021-Jun-11 at 19:12
            tl;dr

            valgrind not showing reachable memory leak source

            details

            C++ application was built using cmake with following extra options:

            ...

            ANSWER

            Answered 2021-Jun-11 at 14:51

            In case of problems with valgrind, it is always recommended to try with a recent version, either the last release or the git version.

            Note that it is quite easy to recompile valgrind from sources, at it has very few dependencies.

            In case of specific problems with stack traces, it is always useful to compare the stack traces produced by valgrind and gdb by using valgrind + gdb + vgdb.

            Put a breakpoint in gdb at relevant places, and you can then compare the gdb stacktrace produced by the gdb backtrace command and the valgrind stacktrace produced by the monitoring command:

            Source https://stackoverflow.com/questions/67917336

            QUESTION

            Gradle build on Android Studio is taking around 40 min when project folder resides in Desktop Mac OS BigSur
            Asked 2021-Jun-11 at 06:03

            I am running on Android Studio 4.1.1 with 16 gb mac book pro I have only one Module in my Android App, I am not using any third party library , when i build the project its taking more than 40 min to finish the build execution , If you look at my gradle.properties i have mentioned below

            ...

            ANSWER

            Answered 2021-Jun-02 at 06:05

            Do these things

            1. add org.gradle.caching=true add org.gradle.daemon=true If you have two variants of your app in the dev variant disable pngcrunching and disable it such that instead of searching for appropriate image it searches for a particular image itself(xxhdpi)

            in your dev block in gradle add these two lines splits.abi.enable=false and splits.density.enable=false

            Optimize your firebase crashalytics if you're using it. [Also see the google talk on improving Gradle builds][1]

            I improved my gradle time from 17 minutes to 9 following the above practices. Make sure you have offlinegradle button clicked in the gradle tab to the right of the screen. [1]: https://www.youtube.com/watch?v=7ll-rkLCtyk

            Source https://stackoverflow.com/questions/67799283

            QUESTION

            Error: Address in use 1883 mosquito Docker
            Asked 2021-Jun-11 at 02:49

            Getting error on starting mosquito docker in ubuntu 16.04.

            ...

            ANSWER

            Answered 2020-Dec-30 at 17:33

            You just have another instance of Mosquitto already running.

            Use ps ax | grep mosq to see if Mosquitto is still running outside of a container. If you find it, use sudo kill -9 PID where you replace PID with its process ID. Or you can try sudo killall -9 mosquitto.

            If that doesn't solve the problem, check Docker.

            Use docker ps to list all the Docker containers currently running.

            Use docker stop ID where you replace the ID for each container that's running.

            If you fail to find an instance of Mosquitto, reboot your computer and try again.

            Source https://stackoverflow.com/questions/65510991

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install snap

            v2.0.1 For Linux
            v2.0.1 for Windows 10
            v2.0.0 for OSX
            SNAPCommand for Linux
            SNAPCommand for Windows 10
            SNAPCommand for OSX

            Support

            SNAP has a one page Quick Start Guide and a more extensive Manual.
            Find more information at:

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          • HTTPS

            https://github.com/amplab/snap.git

          • CLI

            gh repo clone amplab/snap

          • sshUrl

            git@github.com:amplab/snap.git

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