diamond | Accelerated BLAST compatible local sequence aligner | Genomics library

 by   bbuchfink C++ Version: v2.1.6 License: GPL-3.0

kandi X-RAY | diamond Summary

kandi X-RAY | diamond Summary

diamond is a C++ library typically used in Artificial Intelligence, Genomics applications. diamond has no bugs, it has a Strong Copyleft License and it has medium support. However diamond has 1 vulnerabilities. You can download it from GitHub.

DIAMOND is a sequence aligner for protein and translated DNA searches, designed for high performance analysis of big sequence data. The key features are:.

            kandi-support Support

              diamond has a medium active ecosystem.
              It has 821 star(s) with 158 fork(s). There are 35 watchers for this library.
              There were 7 major release(s) in the last 12 months.
              There are 130 open issues and 454 have been closed. On average issues are closed in 29 days. There are 4 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of diamond is v2.1.6

            kandi-Quality Quality

              diamond has no bugs reported.

            kandi-Security Security

              diamond has 1 vulnerability issues reported (0 critical, 1 high, 0 medium, 0 low).

            kandi-License License

              diamond is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              diamond releases are available to install and integrate.

            Top functions reviewed by kandi - BETA

            kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of diamond
            Get all kandi verified functions for this library.

            diamond Key Features

            No Key Features are available at this moment for diamond.

            diamond Examples and Code Snippets

            No Code Snippets are available at this moment for diamond.

            Community Discussions


            In a diamond inheritance structure, is there a way to cast between the branches?
            Asked 2021-Jun-14 at 09:25

            I have a diamond inheritance structure in my code in which I have a pointer to the bottom object. I tried to case this to a pointer to the left of the two diamond sides, cast it again to the top of the diamond, and again to the right side. But apparently, C++ kind of remembers the order of casting and things don't work as expected. Example code:



            Answered 2021-Jun-14 at 08:50

            You can see the desired result by changing the last casting to:

            Source https://stackoverflow.com/questions/67967037


            Remove text space from a JavaScript
            Asked 2021-Jun-14 at 04:22

            This is a simple one for JS programmers. Base on this demo, https://codepen.io/gschier/pen/jkivt

            I want 'The pen is simple.' to be 'The pen issimple.' To remove the space after 'is'.

            I tried different areas with no luck. I only know CSS and HTML but not so much JS.

            Of course this doesn't make sense with this demo example, I want to start it with an alphabet to make a sentence, for example



            Answered 2021-Jun-14 at 04:01

            Try removing space / new line after A

            Source https://stackoverflow.com/questions/67964614


            How to remove items with something common from list in python 3
            Asked 2021-Jun-14 at 02:51

            code I am trying to remove cards with the same color and number from total cards but I am having trouble making conditions for my for loop



            Answered 2021-Jun-14 at 02:51

            Okay, since there are some things about your question that are not very clear, I am going to assume what seems reasonable and answer with that in mind. My assumptions are:

            1. When there is a match of number and color, both cards should be removed;
            2. If there are repeated cards (same color and number), all of their instances should be removed.

            So, first, I believe in order to make the comparisons easier to understand and more efficient, we can make a specific function to tell us the color of the card based on its suit. This will make your conditions much cleaner:

            Source https://stackoverflow.com/questions/67958526


            Unrecognized Characters Getting Added to Output
            Asked 2021-Jun-11 at 05:05

            I was programming on CLion 2021.1.2 and I received some unrecognized characters in the output of my program that involved the usage of the getchar() function and strings. The goal of the program was to copy the input, replace one or more blanks (i.e. ) that are placed together with just one blank and then print the output. The output string contained some unrecognized characters in the form of diamond-boxed question marks, which I didn't understand why. Below is my code and two sample input-output pairs for reference:

            My Code:



            Answered 2021-Jun-11 at 05:05

            As @kaylum pointed out, you absolutely need to terminate your string before printing it. As good practice, you might also want to give your variables meaningful names. Also, the use of continue's is not needed when else's will work equally well. In addition, since you have a limited-length string, it's good practice to do a bounds-check. Perhaps you want something like this:

            Source https://stackoverflow.com/questions/67931046


            Add macron to letter in faceting label
            Asked 2021-Jun-09 at 04:47

            As the title says, I want to add a macron to a faceting label. An example:



            Answered 2021-Jun-09 at 04:47

            Looks like it's a problem with fct_recode rather than ggplot2. This seems to work just fine

            Source https://stackoverflow.com/questions/67897638


            Layout page in dot net core not showing changes on click from Index page
            Asked 2021-Jun-08 at 03:00

            I have menus on Layout page and I need to make them enabled on click of button which is there on Index view On Index button click I have called controller action which sets the flag using view bag and then I am enabling menu if the flag is set by checking condition on layout page, condition is checked correctly but still menu is not enabled, but if I am clicking any other button then menu is enabling




            Answered 2021-Jun-08 at 03:00

            Here is a demo with ViewBag.Enable. pass @customer.CustomerCode to action,if the it is not null,set ViewBag.Enable to true.Else,set ViewBag.Enable to false.If ViewBag.Enable is true,male the menu enable. Layout:

            Source https://stackoverflow.com/questions/67871938


            Null pointer exception error as method parameter
            Asked 2021-Jun-05 at 05:42

            I am using two sprites as parameters for a method but I am getting a null pointer exception error. Here is my code. The errors are in the checkCollision method. I was trying to declare the parameters Sprite s1 and Sprite s2 but they were still not recognized. I am not sure what I did wrong because when I declared other Sprites as parameters there was no null pointer exception. I would really appreciate your help. Thank you in advance.



            Answered 2021-Jun-05 at 05:42

            e, l, f, ... are "Null Pointers". No object is assigned to this references. You need to create the Sprite objects, before you append them to the ArrayList:

            Source https://stackoverflow.com/questions/67845358


            Can I access results of "setup_data" from "map_data"? (works fine for "compute_layout" but not "map_data") in ggplot2 ggproto
            Asked 2021-Jun-03 at 22:24
            Can I access results of "setup_data" from "map_data" in ggpplot2 ggproto? (works fine for "compute_layout" but not "map_data")

            Hi folks. I'm working on a ggplot2 extension that will implement a new faceting method.

            I don't want to get into the nitty gritty of the algorithm, but suffice it to say that I need to first compute some new columns for each row of the input data, and only then can I perform a compute_layout and map_data.

            Of course, one option is to compute my new columns twice, once inside of compute_layout and once again inside of map_data, but this will be twice as expensive computationally, and just less elegant.

            It seems that setup_params and setup_data are meant for this exact use case.

            What Doesn't Work ❌

            I'm creating a little reproducible example based off this great vignette.

            I've just made a small modification that tries to add a hello column to the data using the setup_data function.



            Answered 2021-Jun-03 at 22:24

            TL;DR: set a new column in every list-element of data in the setup_data function.

            It seems that setup_params and setup_data are meant for this exact use case.

            That's right, but I get the impression from your question that some confusion exists about the order of operations of data ingestion. Facets and coordinates are part of the 'layout' of a plot. Before the layout is setup, layers setup their data (sometimes making a copy of the global data). Then, the layout can inspect the data and make adjustments (typically appending a PANEL column). If we inspect/print to console ggplot2:::Layout$setup, we see the following (comments by me):

            Source https://stackoverflow.com/questions/67828722


            Why does this computed property return 'promise {'?
            Asked 2021-Jun-02 at 20:46

            I am learning Vue Js and I want to develop a small application with which I bring different data according to what I select in a dropdown.

            The problem I am having is that when I want to see what I am bringing (by console) with a computed property, it shows me 'promise {', which inside it is the data with which I want to work, but being in 'pending' I can't extract and use them.

            This is the application that I have developed so far, which brings news depending on the section that is entered:



            Answered 2021-Jun-02 at 18:06

            You'll probably benefit from reading how Promise object works conceptually.

            To your purpose, you might find using the .then() method useful - it essentially will call back to the code inside after the promise has resolved.

            Because you are using an async function, the work is on a separate thread. If you are trying to get the value in a separate thread, it won't know when the data has been loaded.

            Source https://stackoverflow.com/questions/67810225


            Dynamic multiple PIVOT on numeric column
            Asked 2021-Jun-02 at 19:55

            I have a table having data like

            And i want to pivot category(which can increase/decrease) column with period column and also want sold_amt, purchase_price, gross_profit as row, please see required image like

            Thanks in advance.

            Please find create and insert statement of



            Answered 2021-Feb-25 at 09:53

            Here goes your dynamic pivot:

            Source https://stackoverflow.com/questions/66364378

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network


            No vulnerabilities reported

            Install diamond

            You can download it from GitHub.


            The online documentation is located at the [GitHub Wiki](https://github.com/bbuchfink/diamond/wiki).
            Find more information at:

            Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items

            Find more libraries