find-peaks | Algorithm to find peaks in a std : :vector float | Learning library
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kandi X-RAY | find-peaks Summary
Algorithm to find peaks in a std::vector
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QUESTION
I am trying to take my time series data and isolate all data between points of 0, and then identify those intervals with the highest peaks. I am working in python.
Referring to this graph: time series data with peaks and valleys identified
Source: https://tcoil.info/find-peaks-and-valleys-in-dataset-with-python/
Noting that the first and last red valley points are at 0, I want to find a way to take time series data, identify all points at 0 on the y-axis, and then isolate the data in between. For the graph I linked to here, I would want to isolate all data between the first and last red valley point. I want to do this across an entire time series data set, where data between points of 0 on the y-axis are isolated. Now that those intervals are isolated (representing different events/cycles throughout the data), I want to record the highest point within each of these intervals. Then I want to find the intervals with the 5 highest peaks (one peak per each interval). Lastly, I want to output the interval (or range) that contains these top 5 peaks. For context, each of these intervals represents an event/cycle, and I want to find the most extreme. As such, I would want an output that tells me essentially that the most extreme event/cycle occurred between 3/5/20 and 3/24/20.
How can this be done in python? Would I need to smooth the data first? How would I go about isolating data between points of 0 on the y-axis? I am trying to figure out which direction to go in first, and do not have code yet.
...ANSWER
Answered 2021-May-19 at 02:32Let's use the data cited by you. I'll add detailed explanations as comments.
QUESTION
I am looking to find peak regions in 2D data (if you will, grayscale images or 2D landscapes, created through a Hough transform). By peak region I mean a locally maximal peak, yet NOT a single point but a part of the surrounding contributing region that goes with it. I know, this is a vague definition, but maybe the word mountain or the images below will give you an intuition of what I mean.
The peaks marked in red (1-4) are what I want, the ones in pink (5-6) examples for the "grey zone", where it would be okay if those smaller peaks are not found but also okay if they are.
Images contain between 1-20 peaked regions, different in height. The 2D data for above surf plot is shown below with a possible result (orange corresponds to Peak 1, green corresponds to Peak 2 a/b, ...). Single images for tests can be found in the description links:
Image left: input image - - - - middle: (okaish) result - - - - right: result overlayed over image.
The result above was produced using simple thresholding (MATLAB code):
...ANSWER
Answered 2017-May-09 at 19:26In such peak finding problems, I mostly use morphological operations. Since the Hough transform results are mostly noisy, I prefer blurring it first, then apply tophat and extended maxima transform. Then for each local maximum, find the region around it with adaptive thresholding. Here is a sample code:
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