GEMMA | Genome-wide Efficient Mixed Model Association | Genomics library

by genetics-statistics C++ Version: v0.98.5 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(9)Vulnerabilities Install Support

kandi X-RAY | GEMMA Summary

GEMMA is a C++ library typically used in Artificial Intelligence, Genomics applications. GEMMA has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

GEMMA is a software toolkit for fast application of linear mixed models (LMMs) and related models to genome-wide association studies (GWAS) and other large-scale data sets. Check out RELEASE-NOTES.md to see what's new in each GEMMA release. Please post suspected bugs to Github issues. For questions or other discussion, please post to the GEMMA Google Group. We also encourage contributions, for example, by forking the repository, making your changes to the code, and issuing a pull request. Currently, GEMMA provides a runnable Docker container for 64-bit MacOS, Windows and Linux platforms. GEMMA can be installed with Debian, Conda, Homebrew and GNU Guix. With Guix you find the latest version here as it is the version we use every day on For installation instructions see also INSTALL.md. We use continous integration builds on Travis-CI for Linux (amd64 & arm64) and MacOS (amd64). GEMMA builds on multiple architectures, see the Debian build farm. *(The above image depicts physiological and behavioral trait loci identified in CFW mice using GEMMA, from Parker et al, Nature Genetics, 2016.).

Support

Quality

Security

License

Reuse

Support

GEMMA has a low active ecosystem.

It has 213 star(s) with 107 fork(s). There are 18 watchers for this library.

It had no major release in the last 12 months.

There are 46 open issues and 192 have been closed. On average issues are closed in 420 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of GEMMA is v0.98.5

Quality

GEMMA has 0 bugs and 0 code smells.

Security

GEMMA has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

GEMMA code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

GEMMA is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

GEMMA releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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GEMMA Key Features

No Key Features are available at this moment for GEMMA.

GEMMA Examples and Code Snippets

No Code Snippets are available at this moment for GEMMA.

Community Discussions

Trending Discussions on GEMMA

Create bar plot using diff() function to determine the change in survival from one event the next

Connecting an ESP8266 to an Arduino Uno using Blynk

filter a list of nested dictionary using loops

Iterating through nested array in JavaScript / React with error

CSS missing certain sections in EC2 instance but works fine in localhost. How do I resolve?

How to write recursion where items depend on each other?

can we process the multiple files sequentially using spring Batch while multiple threads used to process individual files data..?

How to map columns From one DataFrame onto another based on a column values between the two?

typescript handling compile errors

QUESTION

Create bar plot using diff() function to determine the change in survival from one event the next

Asked 2022-Mar-28 at 09:22

I have a survival dataset df_survival with four columns Date, Tank, Feed_Group, and Census.

Here is the code to create a the dataset:

...

ANSWER

Answered 2022-Mar-28 at 09:22

dplyr::summarize can be used to obtain fewer rows for each group (not just aggregate to one row). Alternatively you can use dplyr::group_modify.

Source https://stackoverflow.com/questions/71638165

QUESTION

Connecting an ESP8266 to an Arduino Uno using Blynk

Asked 2021-Dec-22 at 20:46

I am working on a project where I am trying to turn on LEDs over wifi using the Blynk app through an ESP8266 and an Arduino uno. I believe the circuit is set up properly as I was able to run an empty script and through the serial monitor send the "AT" command and get feedback. Also the ESP8266 is showing up on my wifi settings. However, from there I tried to setup a quickstart device on the blynk app and that's where I am stuck.

The major error seems to be that I can't download the necessary library, "ESP8266_Lib.h", in order for the program, Blynk initially gives you, to run. I tried to download the latest version of the blynk library on github but that still did not help.

After this phase of the project, I hope to move to an adrafruit gemma board, and hope that won't cause any further issues. The code Blynk provided and the error message is below: '''

...

ANSWER

Answered 2021-Dec-22 at 20:46

The BlynkESP8266_Lib is only available in the release zip of the Blynk libraries on the Release page. See the Assets section.

Copy the folder BlynkESP8266_Lib from the zip into libraries folder in your sketchbook folder. (Location of the sketchbook folder is set in the Preferences dialog of the Arduino IDE.)

Source https://stackoverflow.com/questions/70454154

QUESTION

filter a list of nested dictionary using loops

Asked 2021-May-24 at 05:30

I've got a List of dict like below.

The structure of it is similar to a tree in which each node has an arbitray number of children. i want to select the node that has a matching 'name' that is provided as input.

...

ANSWER

Answered 2021-May-23 at 16:45

You can use recursive generator function to search for the nodes. For example:

Source https://stackoverflow.com/questions/67662039

QUESTION

Iterating through nested array in JavaScript / React with error

Asked 2020-Dec-27 at 16:15

I am getting an error whilst mapping through the nested array locations. Previously this logic has worked and I think the array type is the same so not sure why this is not working on this locations array.

Error:

...

ANSWER

Answered 2020-Dec-27 at 12:10

The second object of the first array is not valid. Try to change the "canal" value of the second object from:

Source https://stackoverflow.com/questions/65465423

QUESTION

CSS missing certain sections in EC2 instance but works fine in localhost. How do I resolve?

Asked 2020-Aug-04 at 19:00

I have created an EC2 instance and hosted my PHP code within this from a git clone.

On localhost my CSS shows my site as expected. When I view the same site on the IP address from my instance, the CSS does not pull through correctly. Some of it works correctly - such as colors. Other bits like max-sizing does not work. Why would this happen?

This is the head in my HTML

...

ANSWER

Answered 2020-Aug-04 at 19:00

I think it may be just in your CSS alone.

For example you have your container as an ID but are calling it in your html as a class.

Also some css is missing, its possible that the mt-2 class is overwriting your own custom classes.

My guess is when you view it locally the remote css isn't loading, or when you view it on EC2 your custom CSS isnt loading. Taking a stab in the dark here, try adding a / in front of your css calls and see if that works.

Source https://stackoverflow.com/questions/63252172

QUESTION

How to write recursion where items depend on each other?

Asked 2020-Jun-09 at 22:23

I want to write a function, which returns a list of people a person relies on. However, the people relied upon, could in turn rely on the person themselves. For example:

...

ANSWER

Answered 2020-Jun-09 at 21:52

I find it useful to pass around a "memo" object when recursing that keeps track of where we've been already to avoid circular loops:

Source https://stackoverflow.com/questions/62291761

QUESTION

can we process the multiple files sequentially using spring Batch while multiple threads used to process individual files data..?

Asked 2020-Mar-29 at 23:36

I want to process multiple files sequentially and each file needs to be processed with the help of multiple threads so used the spring batch FlatFileItemReader and TaskExecutor and it seems to be working fine for me. As mentioned in the requirement we have to process multiple files, so along with FlatFileItemReader, I am using MultiResourceItemReader which will take a number of files and process one by one where I am facing issues. Can someone help me what is the cause of exception? What is the approach to fix it..?

...

ANSWER

Answered 2020-Mar-29 at 23:36

Since you are using the reader in a multi-threaded step, a thread could have closed the current file while another thread is trying to read from that file at the same time. You need to synchronize access to your reader with a SynchronizedItemStreamReader:

Source https://stackoverflow.com/questions/60883344

QUESTION

How to map columns From one DataFrame onto another based on a column values between the two?

Asked 2020-Feb-05 at 16:42

Basically, I just want map values from one dataframe to another based on some common column, ('ID' + 'Key')

df1:

...

ANSWER

Answered 2020-Feb-05 at 16:42

IIUC

Source https://stackoverflow.com/questions/60080319

QUESTION

typescript handling compile errors

Asked 2020-Feb-02 at 18:32

I have a simple typescript program -

...

ANSWER

Answered 2020-Feb-02 at 18:32

Array.prototype.find was first available with ES2015.

Thus, you need to tell TypeScript that you are using ES2015. You can use the --lib compiler option: TypeScript doc.

You can also use the "lib" config in tsconfig.json, for instance:

Source https://stackoverflow.com/questions/60029188

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install GEMMA

To install GEMMA you can. Compiling from source takes more work, but can potentially boost performance of GEMMA when using specialized C++ compilers and numerical libraries.
Download the precompiled or Docker binaries from releases.
Use existing package managers, see INSTALL.md.
Compile GEMMA from source, see INSTALL.md.
Fetch the latest stable release and download the file appropriate for your platform. For Docker images, install Docker, load the image into Docker and run with something like. For .gz files run gunzip gemma.linux.gz or gunzip gemma.linux.gz to unpack the file. And make sure it is executable with.
Fetch the latest stable release and download the file appropriate for your platform.
For Docker images, install Docker, load the image into Docker and run with something like docker run -w /run -v ${PWD}:/run ed5bf7499691 gemma -gk -bfile example/mouse_hs1940
For .gz files run gunzip gemma.linux.gz or gunzip gemma.linux.gz to unpack the file. And make sure it is executable with chmod u+x gemma-linux ./gemma-linux

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: