sga | de novo sequence assembler using string graphs | Genomics library

 by   jts C++ Version: Current License: No License

kandi X-RAY | sga Summary

kandi X-RAY | sga Summary

sga is a C++ library typically used in Artificial Intelligence, Genomics applications. sga has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

SGA - String Graph Assembler.
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            kandi-support Support

              sga has a low active ecosystem.
              It has 221 star(s) with 80 fork(s). There are 36 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 43 open issues and 73 have been closed. On average issues are closed in 109 days. There are 3 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of sga is current.

            kandi-Quality Quality

              sga has no bugs reported.

            kandi-Security Security

              sga has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              sga does not have a standard license declared.
              Check the repository for any license declaration and review the terms closely.
              OutlinedDot
              Without a license, all rights are reserved, and you cannot use the library in your applications.

            kandi-Reuse Reuse

              sga releases are not available. You will need to build from source code and install.
              Installation instructions are not available. Examples and code snippets are available.

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            sga Key Features

            No Key Features are available at this moment for sga.

            sga Examples and Code Snippets

            No Code Snippets are available at this moment for sga.

            Community Discussions

            QUESTION

            Oracle Insert query takes long time in Production but performs in 3 seconds in lower environment
            Asked 2021-Mar-22 at 13:15

            In my Oracle stored procedure I have a SQL query which takes very long in production but in lower environment it takes only about 3-4 seconds. Please note this query is in loop and runs for 7000 times. I have no choice other than the loop as this involves lots of logic to validate the data and can't move it to simple query.

            ...

            ANSWER

            Answered 2021-Mar-10 at 07:51

            there are some considerations:

            1. does the same data volume between the production and the dev? If there are 10k data in the dev while there are 10M data in the production env, it does make sense of the slowness in the production env.

            2. the target SQL statement is divided two parts: DB engine firstly select the data,then insert the data into table GTT_POSTING_XX. Please find which part is the bottleneck from the execution plan. If the insert part is slow, please check if there are indexes in this table GTT_POSTING_XX; if does, please disable these indexes before insert; after insert, please enable these indexes. if the select part is slow, please check if table meter_f has index on column meter_id,meter_date and meter_period_duration. Please assure execution plan can leverage these indexes on table meter_f.

            Source https://stackoverflow.com/questions/66559151

            QUESTION

            Haskell: All combinations between multiple Strings
            Asked 2021-Jan-01 at 12:33

            Suppose I have a list of Strings like this:

            ["aesfa","gwopq","awefg"]

            I would want to get all possible combinations between those Strings, something like this:

            ["aga","agw","age","agf", ... ,"sga","sgw", ... , "aqf","aqg"]

            The strings inside the list have all the same lenght, but could be any lenght, and the list could contain different numbers of strings

            I tried the following list comprehensions:

            -getCombinations (z:zs) = [x:y | x <- z, y <- zs]

            This gives me, obviously, a list of the combinations between all the characters of the first string and the rest of the strings (not the characters).

            -getCombinations (z:zs) = [x:y | x <- z, y <- getCombinations zs]

            This doesnt work if I dont do a pattern matching for the empy list, I did it like this:

            getCombinations [] = []

            but doing that make the function return always the empty list no matter what

            weirdly enough, if I do:

            -getCombinations (z:zs) = [x:[y] | x <- z, y <- head zs]

            it gives me the combinations between the first two strings

            I tried to extend that to get another String and I ended up with this:

            getCombinations (z:zs) = [x:[y]++[w] | x <- z, y <- (head zs), w <- (head(tail zs))]

            That gave me the combinations of the first three strings

            ...

            ANSWER

            Answered 2021-Jan-01 at 12:32

            You are actually quite close. The only problem is the case for the empty list:

            Source https://stackoverflow.com/questions/65529550

            QUESTION

            Spring - Not a managed type: class
            Asked 2020-Dec-17 at 17:25

            So, i'm working with 3 different datasources in my application. Initially there were 2, but i had to add another one due to some project changes. After creating a model, a repository, a class to configure this new datasource i'm not able to start my application. It gives the error below:

            ...

            ANSWER

            Answered 2020-Dec-17 at 17:25

            Turns out i had to add the entityManagerFactoryRef to the @EnableJpaRepositories annotation in the config class:

            Source https://stackoverflow.com/questions/65295993

            QUESTION

            Download all NCBI PubMed IDs based on a tag
            Asked 2020-Dec-16 at 16:13

            I am able to read in a PubMed ID of a paper, and return a set of records about that paper using this code:

            ...

            ANSWER

            Answered 2020-Dec-16 at 16:13

            QUESTION

            AttributeError: ResultSet object has no attribute 'find_all'. BeautifulSoup
            Asked 2020-Oct-31 at 16:43

            I'm trying to parse tables from a website to a local dataframe.

            here is the html:

            ...

            ANSWER

            Answered 2020-Oct-31 at 15:03

            Actually, tables is a list, so you need to iterate over it to get each element:

            Source https://stackoverflow.com/questions/64623090

            QUESTION

            Min Max Scaler on parts of data
            Asked 2020-Oct-05 at 02:17

            I have a dataframe like this:

            ...

            ANSWER

            Answered 2020-Oct-05 at 02:15

            What you want to do is applying a function on a column based on the value of another column, in pandas the best way to do this is by using groupby.

            In this case, we can do the scaling manually like this:

            Source https://stackoverflow.com/questions/64201411

            QUESTION

            How to end loop if input is negative in Python?
            Asked 2020-Sep-30 at 13:37

            I am writing a program for an assignment that has the following conditions:

            1. 12 bars per case, represented by bars_per_case

            2. A price of 1 per bar: price_per_bar

            3. A case cost of 8: cost_per_case

            4. A 10% cut: SGA

            The program should ask the user how many bars were sold and calculate the SGA amount and total net gain cheer_proceeds. The program should have a different message depending on cheer_proceeds: "Congratulations ..." when cheer_proceeds >= 500 or "Sorry ..." when cheer_proceeds < 500.

            The program should NOT accept a negative number of bars. If a negative number is entered, the program should NOT move forward to calculate totals until valid data is entered.

            My problems are:

            1. When I use the while loop, the last lines the if cheer_proceeds... keeps looping
            2. When entering a negative number the code still continues

            Where would I insert a break in order to stop the loop?

            My code:

            ...

            ANSWER

            Answered 2020-Sep-30 at 03:19

            When the user enters an amount, just loop until the amount is non-negative:

            Source https://stackoverflow.com/questions/64130271

            QUESTION

            Accessing data in deep nested dictionary
            Asked 2020-Sep-16 at 13:32

            With the code I can search for data without problem. But let´s say I know the "name" of a Virtual Machine, but don´t want to search for it manually, but don´t know it´s "uuid".. would it be possible that the code goes (loops?) through the whole json file (it´s deeply nested), finds that "name" and returns the "uuid"? Somewhat like this if "name" == "DEV Ubuntu 18": print("uuid") I know it´s not that simple, like above, but it serves only as explanation what I want to achieve.

            ...

            ANSWER

            Answered 2020-Sep-16 at 13:32

            You can search the tree recursively, for example (d is your data from the question):

            Source https://stackoverflow.com/questions/63920373

            QUESTION

            SwiftUI - Return values from array of structs are all in one row
            Asked 2020-Mar-20 at 15:19

            I am calling a function in order to do a select statement in a bundled SQLite database. The function returns an array of structs. The database is being read correctly as I have put some print commands in the code. However the final array only has 1 row in it, which contains all the data, instead of 16 rows of structs.

            The struct code, which is in databaseHelper.swift, is...

            ...

            ANSWER

            Answered 2020-Mar-20 at 15:19

            I'm not sure why you are putting the brackets in this call:

            Source https://stackoverflow.com/questions/60776742

            QUESTION

            SQLite.swift in SwiftUI app will not compile
            Asked 2020-Mar-17 at 03:26

            I'm trying to read a database and copy the rows into an array in swiftUI but I don't know the correct syntax to append the array. Here is my databaseHelper.swift

            ...

            ANSWER

            Answered 2020-Mar-17 at 03:26

            buttonTable is a sqlite.swift table and needs to be more than a string.

            At some point you need to define your table like this:

            Source https://stackoverflow.com/questions/60707250

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install sga

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            https://github.com/jts/sga.git

          • CLI

            gh repo clone jts/sga

          • sshUrl

            git@github.com:jts/sga.git

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