dropEst | initial analysis | Genomics library

 by   kharchenkolab C++ Version: Current License: GPL-3.0

kandi X-RAY | dropEst Summary

kandi X-RAY | dropEst Summary

dropEst is a C++ library typically used in Artificial Intelligence, Genomics applications. dropEst has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Pipeline for initial analysis of droplet-based single-cell RNA-seq data
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              dropEst has a low active ecosystem.
              It has 63 star(s) with 31 fork(s). There are 17 watchers for this library.
              OutlinedDot
              It had no major release in the last 6 months.
              There are 29 open issues and 90 have been closed. On average issues are closed in 178 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of dropEst is current.

            kandi-Quality Quality

              dropEst has 0 bugs and 0 code smells.

            kandi-Security Security

              dropEst has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              dropEst code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              dropEst is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              dropEst releases are not available. You will need to build from source code and install.
              It has 386 lines of code, 0 functions and 12 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

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            dropEst Key Features

            No Key Features are available at this moment for dropEst.

            dropEst Examples and Code Snippets

            No Code Snippets are available at this moment for dropEst.

            Community Discussions

            QUESTION

            Is it possible? : docker running image with host files
            Asked 2020-Sep-25 at 00:36

            I have a little question about docker. Please understand me, I`m elementary level about docker. I'm using CentOS 7 Linux.

            When I use docker (images), (espatially dropest(https://dropest.readthedocs.io/en/latest/setup.html#installation) I understand, and download image successfully with code below :

            docker pull vpetukhov/dropest:latest

            and get start with code below :

            docker run -it vpetukhov/dropest

            and copy my files to runing with dropest (Copying files from host to Docker container) with code below :

            docker cp ./myfile acb889c0c379:/home/user

            and running dropest(the program what I use), after running dropest, copy output files to my linux server.

            docker cp acb889c0c379:~/outputFilePath/outputFile.txt ./outputFile.txt

            In conclusion: docker run CONTAINER -> copy file to CONTAINER -> running program -> copy outputFile to server. I just want use 'dropest' program! there is nothing else what I want in Container.

            Is there any other option? like:

            [myID@server]$docker run [something option] dropest (dropest command with myFiles)(myFiles are located on server)

            then obtain outputFiles on server

            Please help. Best regards.

            ...

            ANSWER

            Answered 2020-Sep-24 at 11:15

            Why not just bind-mount your files into your container? e.g. docker run -v "/path/to/your/files:/files" -ti --rm vpetukhov/dropest:latest /files/

            Source https://stackoverflow.com/questions/64045220

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install dropEst

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            CLONE
          • HTTPS

            https://github.com/kharchenkolab/dropEst.git

          • CLI

            gh repo clone kharchenkolab/dropEst

          • sshUrl

            git@github.com:kharchenkolab/dropEst.git

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