dropEst | initial analysis | Genomics library
kandi X-RAY | dropEst Summary
kandi X-RAY | dropEst Summary
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
Support
Quality
Security
License
Reuse
Top functions reviewed by kandi - BETA
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of dropEst
dropEst Key Features
dropEst Examples and Code Snippets
Community Discussions
Trending Discussions on dropEst
QUESTION
I have a little question about docker. Please understand me, I`m elementary level about docker. I'm using CentOS 7 Linux.
When I use docker (images), (espatially dropest(https://dropest.readthedocs.io/en/latest/setup.html#installation) I understand, and download image successfully with code below :
docker pull vpetukhov/dropest:latest
and get start with code below :
docker run -it vpetukhov/dropest
and copy my files to runing with dropest (Copying files from host to Docker container) with code below :
docker cp ./myfile acb889c0c379:/home/user
and running dropest(the program what I use), after running dropest, copy output files to my linux server.
docker cp acb889c0c379:~/outputFilePath/outputFile.txt ./outputFile.txt
In conclusion: docker run CONTAINER -> copy file to CONTAINER -> running program -> copy outputFile to server. I just want use 'dropest' program! there is nothing else what I want in Container.
Is there any other option? like:
[myID@server]$docker run [something option] dropest (dropest command with myFiles)
(myFiles are located on server)
then obtain outputFiles on server
Please help. Best regards.
...ANSWER
Answered 2020-Sep-24 at 11:15Why not just bind-mount your files into your container?
e.g. docker run -v "/path/to/your/files:/files" -ti --rm vpetukhov/dropest:latest /files/
Community Discussions, Code Snippets contain sources that include Stack Exchange Network
Vulnerabilities
No vulnerabilities reported
Install dropEst
Support
Reuse Trending Solutions
Find, review, and download reusable Libraries, Code Snippets, Cloud APIs from over 650 million Knowledge Items
Find more librariesStay Updated
Subscribe to our newsletter for trending solutions and developer bootcamps
Share this Page