octopus | Bayesian haplotype-based mutation | Genomics library
kandi X-RAY | octopus Summary
kandi X-RAY | octopus Summary
Octopus is a mapping-based variant caller that implements several calling models within a unified haplotype-aware framework. Octopus takes inspiration from particle filtering by constructing a tree of haplotypes and dynamically pruning and extending the tree based on haplotype posterior probabilities in a sequential manner. This allows octopus to implicitly consider all possible haplotypes at a given loci in reasonable time.
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Trending Discussions on octopus
QUESTION
I have installed a Ceph cluster V15 (Octopus). Following the general setup guide a Grafana Dashboard is installed during bootstrapping the cluster. This is a nice feature. But the dashboard can be access on port :3000 from anonymous without authentication.
I guess this is because of the configuration of the anonymous mode in /etc/grafana/grafana.ini:
...ANSWER
Answered 2021-Jun-10 at 10:32There's an instance of the grafana.ini file on the grafana host:
QUESTION
When a user signs up,
we send an HTTPS PUT request to Email Octopus
in order to add that user to an email marketing list.
This PUT request includes the following user`s data:
- first name
- last name
- country
We followed the guidelines here:
https://emailoctopus.com/api-documentation
We also followed the same syntax as mentioned here:
https://emailoctopus.com/api-documentation/lists/create-contact
However, we get an "Invalid Parameters" response.
Any idea what are we doing wrong?
We send the following request:
ANSWER
Answered 2021-Jun-08 at 04:53After discussing with EmailOctopus support,
we fixed the issue by doing the following:
We added the following header to our HTTPS request:
QUESTION
I'm not exactly sure where my issue is here, but I believe it is on the octopus side. I am trying to deploy my octopus worker. There are essentially 4 steps to my deploy script.
- Update kube-config
aws eks update-kubeconfig
- Run helm upgrade
helm upgrade --install
- Create IAM Policy via terraform
cd terraform
terraform init
- *With s3 backend parameters set
terraform plan -var-file=default.tfvars -out=tfplan
terraform apply tfplan
- Create IAM serviceaccount attach IAM policy to octopus worker role
eksctl create iamserviceaccount --attatch-policy-arn={iam-policy-arn}
I've left out some steps/flags, but this is the gist of it. I have a public github repo that houses all of my terraform modules. Inside this repo, I have a terraform directory where I reference that public repo:
...ANSWER
Answered 2021-May-27 at 22:20Ended up finding my answer. The octopus worker must have got some sort of interactive prompt because I was trying to source the git repo through ssh. Changed it to HTTPS and worked fine.
QUESTION
I'm trying to package my application into a zip file, in order to send it to Octopus.
The log looks like this:
...ANSWER
Answered 2021-May-18 at 06:28I think the real issue is that you did not set the right Sources Path for the project under the hosted agent.
If your repos's branch has the folder called _KFPortal-CI
, then you should set the Sources Path to
QUESTION
I have a Binary Search Tree and I am trying to trace recursively in order through the tree and append each key,value to a list. It is only appending the first key,value to the list and not going through the list in order. I pasted my code below, along with the test code I used at the bottom. Any help on how to get past this issue is super appreciated!
...ANSWER
Answered 2021-May-13 at 03:52The problem is here:
QUESTION
I've been trying different ways to randomize the questions in a little quiz I'm making, but all the methods I'm finding are using a function that will still repeat items when you end the function and call it again. I've tried using pop to do it but have only run into that same issue.
Here is some of my code for reference.
...ANSWER
Answered 2021-May-03 at 00:55You didn't show how you try to get random elements so you could do something what changes order back to original.
You can use random.shuffle(list)
to set random order on the list.
And then you can use for item on list: ...
to get items without repetition.
QUESTION
I spent some time recently seeing if I could get my Azure Devops .NET Core-based pipelines "translated" to AWS CodeDeploy (our web infrastructure is in AWS), but for the life of me I cannot figure out how to update the appsettings.json files with any environment-specific values.
Azure Devops, Bamboo, Octopus, I think even Jenkins and TeamCity support variable substitution on JSON configuration files, but I just cannot figure out how to make that happen in AWS CodeDeploy.
Is there a way to do this? Is there some common workaround that people are using?
...ANSWER
Answered 2021-Apr-27 at 23:25I ended up in a fairly lengthy discussion with AWS support (though I was trying to make a feature request) and what came out of it was... AWS CodeDeploy just doesn't support that.
Now, IMO, this really demonstrates a lack of maturity in the product, and/ or an unwillingness to support traditional .NET Core code bases, but naturally it can't be left like that. So... I built a tool.
Github now has an open-source project at https://github.com/jholovacs/varsub that allows you to perform a variable substitution on a JSON file using a secure parameter, specifying the path to the property value.
I hope this saves someone else some headaches.
QUESTION
I need to make the arrow of the right side colorful #2b6a83
...ANSWER
Answered 2021-Apr-06 at 20:40You where almost there ;) Just add the background-color: #2b6a83
to your :before
and :after
elements. Be aware that an :after
element with a position absolute will be rendered in front of the parent element. You can fix that by using a simple negative z-index
like z-index: -1
:
QUESTION
I am new to the whole coding world. And I am currently creating a learning app for kids, and one of the categories included is taking a quiz. I wanted to shuffle all the questions and I was able to do so but the problem I am facing now is that the questions gets repeated
here is the code i used for Quiz questions activity
...ANSWER
Answered 2021-Mar-29 at 11:41The issue is you're calling the shuffle function in updateQuestion. So it updates the questionArray everytime updateQuestion method is called.
Solution
Remove shuffleQuestions(); from updateQuestion method and add it before updateQuestion(); in onCreate method such that shuffling happens once in the beginning when the class is loaded.
Updated source code
QUESTION
Using ffmpeg version 4.3.2.
Command:
...ANSWER
Answered 2021-Mar-12 at 01:08You're using arbitrary, unsupported variables. Refer to the drawbox documentation for a list of supported variables (under the section "The parameters for x, y, w and h and t are expressions containing the following constants").
I can only guess what you are trying to do, but here is a simplified valid example:
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