htseq | Python library to facilitate processing | Genomics library

by simon-anders C++ Version: release_0.11.3 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(3)Vulnerabilities Install Support

kandi X-RAY | htseq Summary

htseq is a C++ library typically used in Artificial Intelligence, Genomics applications. htseq has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.

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Support

htseq has a low active ecosystem.

It has 113 star(s) with 58 fork(s). There are 9 watchers for this library.

It had no major release in the last 12 months.

There are 1 open issues and 83 have been closed. On average issues are closed in 254 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of htseq is release_0.11.3

Quality

htseq has no bugs reported.

Security

htseq has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

htseq is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

htseq releases are available to install and integrate.

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htseq Key Features

No Key Features are available at this moment for htseq.

htseq Examples and Code Snippets

No Code Snippets are available at this moment for htseq.

Community Discussions

Trending Discussions on htseq

How to overcome shrink , in deseq?

Error in Snakemake 'Unexpected keyword expand in rule definition'

how to move specific files based on a key and rename them

QUESTION

How to overcome shrink , in deseq?

Asked 2021-Feb-19 at 08:43

Currently trying differential expression between two groups. This code was working 6 months ago, but now I get : deseq2 library

...

ANSWER

Answered 2021-Feb-18 at 19:34

Using an example, i am really not sure about what you have for G1.desc, but lets say:

Source https://stackoverflow.com/questions/66097543

QUESTION

Error in Snakemake 'Unexpected keyword expand in rule definition'

Asked 2021-Feb-09 at 05:19

As in the title, my Snakefile is giving me a SyntaxError for the expand function in the all rule. I am aware that this is typically caused by whitespace/indentation errors HOWEVER I have confirmed that there are no tabs in the file. I've gone through an deleted every whitespace as well as searched the file with grep. I appreciate any advice.
Error Message:

SyntaxError in line 14 of /PATH/to/Snakefile:
Unexpected keyword expand in rule definition (Snakefile, line 14)

Code:

...

ANSWER

Answered 2021-Feb-09 at 05:19

This is an error from python as the rule all has two functions separated by a comma. In this case the second expand call is causing the error. You could replace the , with a + to resolve the error like given below.

Source https://stackoverflow.com/questions/66112918

QUESTION

how to move specific files based on a key and rename them

Asked 2018-Jan-18 at 02:19

I have over 100000 files.

for example, I mentioned 3 files below

...

ANSWER

Answered 2018-Jan-18 at 02:19

I guess a little more of a write up rather than a comment would be helpful. The approach to take is to read the filename (fname) and ID (id) from each line in key.txt and then validate that fname is a file and does exist, and then move the file in "$fname" to whatever "/path/to/move/to/$id" you need.

For example:

Source https://stackoverflow.com/questions/48312559

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install htseq

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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