plass | Level ASSembler : sensitive and precise protein | Genomics library

 by   soedinglab C++ Version: 4-687d7 License: GPL-3.0

kandi X-RAY | plass Summary

kandi X-RAY | plass Summary

plass is a C++ library typically used in Artificial Intelligence, Genomics applications. plass has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Plass (Protein-Level ASSembler) is a software to assemble short read sequencing data on a protein level. The main purpose of Plass is the assembly of complex metagenomic datasets. It assembles 10 times more protein residues in soil metagenomes than Megahit. Plass is GPL-licensed open source software that is implemented in C++ and available for Linux and macOS. The software is designed to run on multiple cores. Plass was used to create a Soil Reference Catalog (SRC) and a Marine Eukaryotic Reference Catalog (MERC).
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              plass has a low active ecosystem.
              It has 78 star(s) with 5 fork(s). There are 9 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 20 open issues and 13 have been closed. On average issues are closed in 47 days. There are no pull requests.
              It has a neutral sentiment in the developer community.
              The latest version of plass is 4-687d7

            kandi-Quality Quality

              plass has no bugs reported.

            kandi-Security Security

              plass has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              plass is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              plass releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            plass Key Features

            No Key Features are available at this moment for plass.

            plass Examples and Code Snippets

            No Code Snippets are available at this moment for plass.

            Community Discussions

            QUESTION

            AttributeError: 'DecisionTreeClassifier' object has no attribute 'precision_score'
            Asked 2020-Oct-08 at 18:08

            i just recently started learning data science. this is what i wrote:

            ...

            ANSWER

            Answered 2020-Oct-08 at 18:08

            DecisionTreeClassifier doesn't have such a method indeed.

            You need to change:

            Source https://stackoverflow.com/questions/64265406

            QUESTION

            How to remove the tags from my beautiful soup result (like : Address = [a,b,c,d,r......])
            Asked 2019-Jun-05 at 09:26

            how I can remove the tags from my beautifulsoup result (like : Address = [a,b,c,d,r......])

            ...

            ANSWER

            Answered 2019-Jun-05 at 08:36

            You can use the text attribute to get the content within the tags:

            Source https://stackoverflow.com/questions/56456777

            QUESTION

            Remove elements of an EDL text file, perform arithmetic on other parts
            Asked 2018-May-24 at 06:46

            I have a simply formatted text file (Edit Decision List) with rows of numbers (timecode frame rate 25) followed by rows of properties (names etc.).

            Ultimately I am trying to:

            1. retrieve the lines starting with * FROM CLIP NAME:   and the row/line (timecode) immediately above. On this line are Timecodes, there are 4 groups of numbers, each are expressed as 00:00:00:00 - or HH:MM:SS:FF or Hours, minutes, seconds, frames. Then I discard everything else.

            2. Use the first 2 number groups (they are start and end times) to derive duration.

            3. Then append duration to the Clip Name line.

            4. Save file as "SourceFileName".txt (original is .edl so they won't overwrite).

            As my frame rate is 25 frames per second I was expecting to decompose each group into a frame count.

            I expected to convert Timecode to 25 frames per second:

            • hours to frame time base (25fps) 1 hour = 1*60*(60*25) = 9000
            • minutes to frame time base (25fps) 1 minute = 1*(60*25) = 1500
            • seconds to frame time base (25fps) 1 second = 1*25f

            That would make a group of 00:02:20:01 = 3501 frames

            • 3501 integer divide // 25 fps = 140 sec
            • 3501 modulo (%) 25 = 1 frame remainder

            • 140/60 = 2 min

            • 140%60 = 20 sec

            Then I would subtract the first group from the second to find the difference. Once I have the difference I recompose the Frame Count to a timecode, just reversing the math.

            I can't work out how to specify the name line then grab the preceding line for arithemetic using the first 2 of the 4 groups.

            So far (not far) I've only established a way for the user to define the source file on their desktop.

            ...

            ANSWER

            Answered 2018-May-24 at 06:46

            Remember the previous line in a separate variable when reading the file:

            Source https://stackoverflow.com/questions/50326487

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install plass

            Plass can be install via conda or as statically compiled Linux version. Plass requires a 64-bit Linux/MacOS system (check with uname -a | grep x86_64) with at least the SSE4.1 instruction set.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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