kaiju | Fast taxonomic classification of metagenomic sequencing | Genomics library

 by   bioinformatics-centre C Version: v1.9.2 License: GPL-3.0

kandi X-RAY | kaiju Summary

kandi X-RAY | kaiju Summary

kaiju is a C library typically used in Artificial Intelligence, Genomics applications. kaiju has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

The program kaiju2table converts Kaiju's output file(s) into a summary table for a given taxonomic rank, e.g., genus. It requires the nodes.dmp and names.dmp files for mapping the taxon identifiers from the third column in the Kaiju output to the corresponding taxon names.
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            kandi-support Support

              kaiju has a low active ecosystem.
              It has 222 star(s) with 64 fork(s). There are 14 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 36 open issues and 210 have been closed. On average issues are closed in 78 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of kaiju is v1.9.2

            kandi-Quality Quality

              kaiju has 0 bugs and 0 code smells.

            kandi-Security Security

              kaiju has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              kaiju code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              kaiju is licensed under the GPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              kaiju releases are available to install and integrate.
              Installation instructions are not available. Examples and code snippets are available.
              It has 109 lines of code, 5 functions and 1 files.
              It has low code complexity. Code complexity directly impacts maintainability of the code.

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            kaiju Key Features

            No Key Features are available at this moment for kaiju.

            kaiju Examples and Code Snippets

            No Code Snippets are available at this moment for kaiju.

            Community Discussions

            QUESTION

            Unable to .map() through nested array?
            Asked 2022-Apr-08 at 10:59

            I am not able to .map() through nested array for some reason. I firstly .map() through stored data and then I tried reiterate with another .map() inside my first iteration but it does not resolve the nested array and it stays the same.

            The "newmap" works fine but gives me a nested array and when I try to reiterate over "newmap" it does not change anything and that's the problem.

            I will show you all relevant information below.

            ...

            ANSWER

            Answered 2022-Apr-08 at 10:59

            QUESTION

            discord/js and angle of arc function
            Asked 2021-Dec-24 at 08:33

            Example:

            Try to get a handle on Arc and I'm running into a wall trying to figure out the end angle. I need something simple so can feed it a percentage and it make an arc that that's percent of a circle.

            I got the arc to start at the top and I know math.pi*2 will get me all the way around but when I try to modify that with the old *0.p trick of a converted percentage I get this.

            white is 0.1/10% red is 0.95/95% green is 0.5/50% blue is 0.7/70%

            but none of them look like that and I just can't figure out the way it's figuring the arc.

            ...

            ANSWER

            Answered 2021-Dec-23 at 20:08

            It's because you forgot that you changed the starting angle. You need to make the angle, at which the arc ends, to be relative to the starting angle. So if you increase the value by the starting value it will work as expected:

            Source https://stackoverflow.com/questions/70463396

            QUESTION

            Trying to write a component that can use config object as dictionary to determine rendering style of list elements
            Asked 2021-Apr-07 at 13:21

            I have a React component that gets back an array of objects representing different groups of items (example: Marvel Characters, DC Characters, Magic Cards, Comic Books) and displays them as either a list of text elements or a grid of photos.

            I'm also getting back a configuration array of objects that lists each group and what it's rendering style should be.

            What I'm struggling to figure out is how I can use that configuration object as a dictionary to determine the rendering style of the elements.

            My first thought was to pass the group elements like this groupsArray[configObject] and then use the return values in a switch like this:

            ...

            ANSWER

            Answered 2021-Apr-07 at 13:21

            Would this be something you are looking for?

            Source https://stackoverflow.com/questions/66986784

            QUESTION

            Data object with array of different groups, trying to display ordered by group type using .map() and pushing to new array nothing is rendering
            Asked 2021-Mar-24 at 18:28

            I have a React Component I'm building out that accepts a data object as props.

            This data object holds an array of groups each with it's own group type.

            What I'm trying to do is map over each group in the array and display it's contents as it's own section, but I also want to ensure that all of the objects with the type grid display together, followed by any sections with a list type no matter what position they are in the array.

            So even if the array holds the values like:

            ...

            ANSWER

            Answered 2021-Mar-24 at 18:28

            I have fixed the issues.

            Sandbox: https://codesandbox.io/s/affectionate-sinoussi-5suro

            You are already looping over data inside renderList, so we can directly have

            {renderList(data)};

            To sort, we can use Array.sort()

            data.sort((a, b) => a.groupType === b.groupType ? 0 : a.groupType > b.groupType ? 1 : -1);

            Also, in switch case you need to push the component and not a function.

            Source https://stackoverflow.com/questions/66786033

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install kaiju

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            CLONE
          • HTTPS

            https://github.com/bioinformatics-centre/kaiju.git

          • CLI

            gh repo clone bioinformatics-centre/kaiju

          • sshUrl

            git@github.com:bioinformatics-centre/kaiju.git

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