Flye | De novo assembler for single molecule sequencing reads | Genomics library

by fenderglass C Version: 2.9.2 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(6)Vulnerabilities Install Support

kandi X-RAY | Flye Summary

Flye is a C library typically used in Artificial Intelligence, Genomics applications. Flye has no bugs, it has no vulnerabilities and it has low support. However Flye has a Non-SPDX License. You can download it from GitHub.

Better assembly of very short sequences (e.g. plasmids or viruses). They vere often missed in previous versions. New --nano-hq mode for ONT Guppy5+ and Q20 reads (3-5% error rate). Optimized default parameters for HiFi (HPC error threshold 0.01 → 0.001; increased min overlap). Polishing improvements: reduced number of possible clusters of errors. Improvements in repeat detection algorithm to further limit a chance of (otherwise infrequent) misassemblies. Scaffolding is no longer performed by default (could be enabled with --scaffold). Bam file input for the standalone polisher (same interface as for FASTA/Q). Automatically selected minimum overlap up to 10k (was 5k). Discontinued --plasmid option due to the improvements in short sequences assembly. --trestle and --subassemblies modes are now deprecated, and will be removed in the future versions. New --extra-params option to modify config-level parameters. Contig paths output in Gfa + number of reads supporting each link (RC tag). Update to minimap 2.18. Several rare bug fixes/other improvements.

Support

Quality

Security

License

Reuse

Support

Flye has a low active ecosystem.

It has 616 star(s) with 142 fork(s). There are 27 watchers for this library.

It had no major release in the last 12 months.

There are 12 open issues and 563 have been closed. On average issues are closed in 55 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of Flye is 2.9.2

Quality

Flye has 0 bugs and 0 code smells.

Security

Flye has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

Flye code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

Flye has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

Flye releases are available to install and integrate.

It has 7158 lines of code, 307 functions and 43 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

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Flye Key Features

No Key Features are available at this moment for Flye.

Flye Examples and Code Snippets

No Code Snippets are available at this moment for Flye.

Community Discussions

Trending Discussions on Flye

Turning Java into an Android app. Added elif and project crashes on load

Django: How to query based on a ForiegnKey and display related data for each ForeignKey?

Android ROOM- How can I display data from 3 related entities in a RecyclerView?

pass multiple value from recyclerview to main activity when button is clicked

Combination of inputs in the snakemake shell script

QUESTION

How to grab related rows between two tables?

Asked 2022-Feb-14 at 21:02

My tables:

...

ANSWER

Answered 2022-Feb-14 at 20:57

SELECT *
FROM excercises t1
WHERE NOT EXISTS ( SELECT NULL 
                   FROM fitnessRecords t2
                   JOIN excercises t3 USING (motionName)
                   WHERE t2.name = 'given name'
                     AND t1.primaryMuscleGroup = t3.primaryMuscleGroup )

Source https://stackoverflow.com/questions/71118007

QUESTION

Turning Java into an Android app. Added elif and project crashes on load

Asked 2020-Dec-13 at 05:58

I'm currently working on turning some old Java code into a functioning android app. I used JavaFX to make the program originally but that won't work for android.

What i'm trying to do is, on a button click, the app should store what the user has selected and just hold it. For some reason this causes the code to crash and i'm not sure what the issue is. After that all I need to do is get it to output the selected items and make sure that the app is randomizing the array output for the workouts.

This is the Android code on Github.

This is the original JavaFX code.

...

ANSWER

Answered 2020-Dec-13 at 05:58

Each item in your adapter is a MuscleItem, not a String. So when you try to cast the result of getItemAtPosition(), an exception is thrown.

Source https://stackoverflow.com/questions/65272623

QUESTION

Django: How to query based on a ForiegnKey and display related data for each ForeignKey?

Asked 2020-May-16 at 00:27

I am brand new to Django and to programming and I'm trying to make a page that will display the Workout with all the associated Exercises listed under each work out.

For example:

Chest

Chest Press Incline Press Flat Flyes

Shoulders

Shoudler Press Arnold Press

Back/Legs

Wide Grip Pull Up Neutral Grip Pull Up Bent Over Row

Here is my code:

models.py

...

ANSWER

Answered 2020-May-16 at 00:27

You can define property to Workout model to retrieve exercises related to the instance. Just add a new method with property decorator to retrieve Exercises related with that Workout.

Source https://stackoverflow.com/questions/61829800

QUESTION

Android ROOM- How can I display data from 3 related entities in a RecyclerView?

Asked 2020-Apr-26 at 02:32

Basically, I have 3 related entities which I need to get data from: exercises, exercise_workout_junction and exercise_workout_goals.

I need to display the following in a RecyclerView:

...

ANSWER

Answered 2020-Apr-26 at 02:32

So you want to perform a join operation then populate the data to a recyclerview. The SQL query is

Source https://stackoverflow.com/questions/61426239

QUESTION

pass multiple value from recyclerview to main activity when button is clicked

Asked 2020-Apr-13 at 23:41

I am working on a gym app,Items are displayed as below.There is add button and next button in layout. when i click on add button which is in recycler-view,the text of button changes to added and remove button is visible as shown in image below. now when i click on next button,all the added items text must be passes to my mainActivity.

i dont know how to do this. here is image

this is my recyclerviewAdapter

...

ANSWER

Answered 2020-Apr-13 at 12:21

In onBindViewHolder() create a setOnClicklisterner and through the setOnclicklisterner create intent and send the information to the mainactivity.

Source https://stackoverflow.com/questions/61187568

QUESTION

Combination of inputs in the snakemake shell script

Asked 2020-Mar-26 at 16:29

I have the below bash script that I would like to convert into a snakefile:

...

ANSWER

Answered 2020-Mar-26 at 16:29

Firstly you don't need an expand in your input. This is needed if you wish to create a list of filenames that have the same pattern.

Next, as long as you already use Unix-type slash in your paths, you may add the RESULTS_DIR into f-strings for readability (but don't forget to double the braces for wildcards).

Finally, there is no need in having a pipeline of scripts separated with &&: that is what Snakemake is designed for.

My version of reworked script:

Source https://stackoverflow.com/questions/60854079

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Flye

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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