FEM | A fast and efficient short read mapper | Genomics library

by haowenz C Version: v0.2 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | FEM Summary

FEM is a C library typically used in Artificial Intelligence, Genomics applications. FEM has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

FEM is a Fast and Efficient short read Mapper. Currently, FEM can return all mapping locations of NGS single-end short reads with up to 7 errors.

Support

Quality

Security

License

Reuse

Support

FEM has a low active ecosystem.

It has 10 star(s) with 5 fork(s). There are 1 watchers for this library.

It had no major release in the last 12 months.

There are 1 open issues and 3 have been closed. On average issues are closed in 73 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of FEM is v0.2

Quality

FEM has no bugs reported.

Security

FEM has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

FEM is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

FEM releases are available to install and integrate.

Installation instructions are not available. Examples and code snippets are available.

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FEM Key Features

No Key Features are available at this moment for FEM.

FEM Examples and Code Snippets

No Code Snippets are available at this moment for FEM.

Community Discussions

Trending Discussions on FEM

Adding missing hours to dataframe in R

How to fix this code and make my own POS-tagger? (PYTHON)

Regex to capture multilines from specific expression until first blank line in Perl

Data not inserting in sqlite3 database using php

How to fix initialization errors?

How to create scatterplot of age vs. bone density in two different colors depending on M or F

How do you get items from txt into presentable table in bash?

Item assignment for flattened array

Beautifulsoup: reference in a previous row in an iteration

Save and Export into Stata using R tidyverse

QUESTION

Adding missing hours to dataframe in R

Asked 2021-Jun-10 at 11:45

I have a data frame where some of the hours in Time GMT are missing.
Normally, the hours should be shown in a sequence from 00:00 to 23:00, but sometimes an hour is missed.

Where an hour is missing in the sequence, I would like to insert a new row.
The new row will be a copy of the previous row, but with the following columns changed as follows:

Time GMT: will contain the next hour of the previous row. i.e, if previous == 5:00, new == 6:00
Sample Measurement: will contain the average between the previous value and the next value in Sample Measurement column.
MDL: will contain the average between the previous value and the next value in column MDL

What have I tried

...

ANSWER

Answered 2021-Jun-09 at 21:36

You could use tidyverse:

Source https://stackoverflow.com/questions/67911017

QUESTION

How to fix this code and make my own POS-tagger? (PYTHON)

Asked 2021-May-27 at 22:05

My program need to read a file with sentences and produce an output like that:

input: Ixé Maria. output: Ixé\PRON Maria\N-PR.

Until now, I wrote this, but the outfile gives me an empty textfile. (please, give me suggestions):

...

ANSWER

Answered 2021-May-20 at 04:03

Starting simply with NLP makes it easier to understand and also to appreciate the more advanced systems.

This gives what you're looking for:

Source https://stackoverflow.com/questions/67612600

QUESTION

Regex to capture multilines from specific expression until first blank line in Perl

Asked 2021-May-17 at 06:13

i have this file and i would like to match everything between #sent_id=\d+ and blank line. Here is my file :

...

ANSWER

Answered 2021-May-17 at 06:13

One way: read the file in chunks of text between empty lines.

Source https://stackoverflow.com/questions/67513575

QUESTION

Data not inserting in sqlite3 database using php

Asked 2021-May-16 at 00:44

Hy guys, I have a sqlite database named signup.db and a signup table in it and I have a php code of a signup page but it us not inserting any data on submit I also am not getting Amy error even on clicking on submit *don't mind SQL injection this is just testing I will use SQL prepared statement when I make my next project Code

...

ANSWER

Answered 2021-May-15 at 16:00

Your code has two issues:

You should query on a db connection

$db->exec($sql);

In $sql string

$pass should be $password

Source https://stackoverflow.com/questions/67547896

QUESTION

How to fix initialization errors?

Asked 2021-Apr-19 at 14:03

I am trying to realize the work of the design template.

In lines 62 and 63 there are errors. I do not understand what might not be so, because I did everything in the book.

Points that are running in main():

The client declaring and initializing an instances of the classes.
The method gets called.

...

ANSWER

Answered 2021-Apr-19 at 14:03

class Gender
{
public:
    virtual string DetermineTheSex() = 0;
};

class Natasha : public Gender

Source https://stackoverflow.com/questions/67162884

QUESTION

How to create scatterplot of age vs. bone density in two different colors depending on M or F

Asked 2021-Mar-25 at 23:05

Trying to generate a scatterplot of some bone density data with age on the X axis and density on the Y axis. Only thing is I want the female data to be plotted in red and the male data to be plotted in blue.

...

ANSWER

Answered 2021-Mar-25 at 21:56

Seems reasonable - what is your issue with this approach? Perhaps your colors are just too similar to see the difference? If you provided a reproducible example people might be able to actually help you.

Here is a reproducible toy example:

Source https://stackoverflow.com/questions/66807917

QUESTION

How do you get items from txt into presentable table in bash?

Asked 2021-Mar-19 at 07:49

I'm trying to retrieve items from Node01.pc and put it within a table.

Example: echo ${NodeCPU[0]} is able to print the item from the line.

But when I use printf or echo it either breaks or does not display the output from the array item.

The formating of the table seems work and it displays only if it's not the arrays. Could it be that there's more than to the file that I can see?

Node01.pc contains

...

ANSWER

Answered 2021-Mar-19 at 07:49

Why worry about all the separate array? Simply loop over all "Node*.pc" files in the current directory and read the contents of each file into an array with readarray and then output the file count and elements nos. 2, 4, 6, 8 of the array in the proper format (adjust elements output as needed), e.g.

Source https://stackoverflow.com/questions/66700574

QUESTION

Item assignment for flattened array

Asked 2021-Mar-14 at 17:37

I am translating a FEM-DG solver, and to apply boundary conditions, I must apply the following code:

dEz.T.flatten()[mapB] = 2*Ez.T.flatten()[vmapB]

where both dEz and Ez are of type . However, after, I check with the assignment with the assertion, assert np.all(dEz.T.flatten()[mapB] == 2*Ez.T.flatten()[vmapB])

which ultimatly fails.

I admit, the flattening and the transpose seems long-winded, but I am translating code from Matlab where the assignment is a little more straightforward, but perhaps I am missing something.

Here is a small example, which shows my problem:

...

ANSWER

Answered 2021-Mar-14 at 17:37

Assigning values to flattened numpy arrays can be hard, because the function flatten() explicitly returns a copy of the initial array, whereas ravel() has an ambiguous documentation stating that arrays are only copied when "needed"(??).

I think the best approach is to take a step back, and define a simple loop calling a two-liner function, which returns the original position in the 2D array [m,n] for any element i in the posterior flattened-array:

Source https://stackoverflow.com/questions/66624883

QUESTION

Beautifulsoup: reference in a previous row in an iteration

Asked 2021-Feb-19 at 13:49

I've been working during last days in a web scraping about this web: https://www.resultados-futbol.com/primera_division_femenina2020/grupo1/jornada6 I've been receiving an amazing help here and I'm very close to get my goal.

I want to get diferents elements of the web to create a dataframe. To extract these elements, I created a loop but that itirates the table and it takes some results. The problem is in cases the result is 0-0 I would like to append to my dictionary a value 'no gol' in 'first goal' and in 'goal minute'. The text of 0-0 is in a different tr than the information of 'first goals' and 'minutes' and then I don't know how to do it properly.

I've done this loop creating a variable 'details' where is the info for 'first goal' and 'minute' of the first event of each match (it's the only one I want). The problem is the loop is only reading the first event of the first game and I get the info of goals and minutes only repeatedly.

This is the code:

...

ANSWER

Answered 2021-Feb-19 at 13:49

There are different solutions you can use to solve this issue.

Solution#1

Very straight forward you can use row.findNext('tr') to get the next

Example

Source https://stackoverflow.com/questions/66277517

QUESTION

Save and Export into Stata using R tidyverse

Asked 2021-Jan-28 at 00:53

I have the code below, where I imported the dataset as a Stata file

...

ANSWER

Answered 2021-Jan-28 at 00:53

It would help if you provide a reproducible example. It appears that you just saved your original Stata file back to Stata because you did not assign the dataset with new variable to the R object.

In the first line of your code before LMI_MENA %>%, add LMI_MENA <- LMI_MENA %>%.

Source https://stackoverflow.com/questions/65928958

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install FEM

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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