parasail | Pairwise Sequence Alignment Library | Genomics library

by jeffdaily C Version: v2.6 License: Non-SPDX

X-Ray Key Features Code Snippets Community Discussions(2)Vulnerabilities Install Support

kandi X-RAY | parasail Summary

parasail is a C library typically used in Artificial Intelligence, Genomics applications. parasail has no bugs, it has no vulnerabilities and it has low support. However parasail has a Non-SPDX License. You can download it from GitHub.

parasail is a SIMD C (C99) library containing implementations of the Smith-Waterman (local), Needleman-Wunsch (global), and various semi-global pairwise sequence alignment algorithms. Here, semi-global means insertions before the start or after the end of either the query or target sequence are optionally not penalized. parasail implements most known algorithms for vectorized pairwise sequence alignment, including diagonal [Wozniak, 1997], blocked [Rognes and Seeberg, 2000], striped [Farrar, 2007], and prefix scan [Daily, 2015]. Therefore, parasail is a reference implementation for these algorithms in addition to providing an implementation of the best-performing algorithm(s) to date on today's most advanced CPUs. parasail implements the above algorithms currently in three variants, 1) returning the alignment score and ending locations, 2) additionally returning alignment statistics (number of exact matches, number of similarities, and alignment length), and 3) functions that store a traceback for later retrieval as a SAM CIGAR string. The three variants exist because parasail is intended to be high-performing; calculating additional statistics or the traceback will perform slower than simply calculating the alignment score. Select the appropriate implementation for your needs. Note: When any of the algorithms open a gap, only the gap open penalty alone is applied.

Support

Quality

Security

License

Reuse

Support

parasail has a low active ecosystem.

It has 191 star(s) with 28 fork(s). There are 17 watchers for this library.

It had no major release in the last 12 months.

There are 22 open issues and 65 have been closed. On average issues are closed in 79 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of parasail is v2.6

Quality

parasail has 0 bugs and 0 code smells.

Security

parasail has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

parasail code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

parasail has a Non-SPDX License.

Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

Reuse

parasail releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi's functional review helps you automatically verify the functionalities of the libraries and avoid rework.
Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of parasail

Get all kandi verified functions for this library.

parasail Key Features

No Key Features are available at this moment for parasail.

parasail Examples and Code Snippets

No Code Snippets are available at this moment for parasail.

Community Discussions

Trending Discussions on parasail

Openpyxl - looking for best option to get this list, dictionaries thing sorted

v-bind data not updating in vue component template

QUESTION

Openpyxl - looking for best option to get this list, dictionaries thing sorted

Asked 2021-Jan-12 at 22:06

I have a JSON file with headers (Student, Rank, City, Interest). Here's the structure of the JSON file

...

ANSWER

Answered 2021-Jan-12 at 22:06

If openpyxl is not an absolute requirement you can really simplify this by either using the python standard library (csv and json) and writing to a csv or using pandas and writing to excel (or just about any other file format):

Standard Library:

Source https://stackoverflow.com/questions/65690890

QUESTION

v-bind data not updating in vue component template

Asked 2020-May-20 at 01:30

When Object is updated in vue component, the Dom is not updating, even though it is connected with v-bind.

...

ANSWER

Answered 2020-May-20 at 01:30

To maintain one-way data flow, your component should emit the new image URL value up to the parent where it can make the appropriate change.

For example, in the parent

Source https://stackoverflow.com/questions/61903515

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install parasail

If you are building from a git clone, the autotools files must first be generated using autoreconf -fi. The custom source distributions will already contain generated autotools files. parasail follows the typical configure, make, make install steps of other GNU autotools-based installations. By default, this will build both a static and shared library as well as the parasail_aligner application. There is no automated test suite at this time, but running make check will build some additional test programs such as test_isa for reporting your compiler and CPU capabilities. By default, running "make install" will install parasail into /usr/local. You will find the parasail.h header in /usr/local/include and the parasail library, e.g., libparasail.a, in /usr/local/lib. If you specify a different prefix during configure, for example configure --prefix=/some/other/path, then look within the include and lib directories there for the parasail.h header and libparasail.so library, respectively. Don't forget to link your application to the parasail library. For example, gcc foo.c -I/where/you/installed/include -L/where/you/installed/lib -lparasail. Otherwise, you'll see errors such as undefined reference to 'parasail_sw'.
The CMakeLists.txt file will compile and link the parasail library as well as the parasail_aligner application and the test_isa test program. It builds some of the other test programs.
Please follow http://mesonbuild.com/Quick-guide.html for how to use Meson. The Meson build files are maintained by @SoapZA. This build currently only supports the SSE and AVX ISAs.
The Windows platform is fully supported as of v1.0.1. The CMake build is the preferred method for building parasail on Windows. Using the CMake GUI application, you can configure the parasail build for Visual Studio 2010, 2012, or 2013. Other versions may also work but were not tested. Both the 32-bit and 64-bit Windows builds should be working. Visual Studio 2010 does not support AVX. Use Visual Studio 2012 or newer.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

Find more information at: