stix | Structural Variant Index | Genomics library

by ryanlayer C Version: Current License: MIT

X-Ray Key Features Code Snippets Community Discussions(10)Vulnerabilities Install Support

kandi X-RAY | stix Summary

stix is a C library typically used in Artificial Intelligence, Genomics applications. stix has no bugs, it has no vulnerabilities, it has a Permissive License and it has low support. You can download it from GitHub.

STIX (Structural Variant Index) supports searching every discordant paired-end and split-read alignment from thousands of sample BAMs or CRAMs for the existence of an arbitrary SV. STIX reports a per-sample count of all concurring evidence. From these counts we can, for example, conclude that an SV with high-level evidence in many samples is common and an SV with no evidence is rare.

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Quality

Security

License

Reuse

Support

stix has a low active ecosystem.

It has 39 star(s) with 3 fork(s). There are 6 watchers for this library.

It had no major release in the last 6 months.

There are 3 open issues and 4 have been closed. On average issues are closed in 102 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of stix is current.

Quality

stix has 0 bugs and 0 code smells.

Security

stix has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

stix code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

stix is licensed under the MIT License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

stix releases are not available. You will need to build from source code and install.

Installation instructions are not available. Examples and code snippets are available.

It has 1515 lines of code, 18 functions and 9 files.

It has high code complexity. Code complexity directly impacts maintainability of the code.

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stix Key Features

No Key Features are available at this moment for stix.

stix Examples and Code Snippets

No Code Snippets are available at this moment for stix.

Community Discussions

Trending Discussions on stix

Connect two containers through docker network

How to convert the http get response from html to json format (from kaggle.com)

Why does this code fail when an int is used but not when a double is used (possible compiler bug)?

Cython not giving speedup

Cant move the menus in the header upwards to align with the logo

How to convert STIX objects to Pydantic models?

Extraneous space between characters/glyphs in groff eqn

How can I hide a line behind marker?

React Mathjax2 does not work on React version 17

Matplotlib version of latex command "\ell" looking extra-slanted

QUESTION

Connect two containers through docker network

Asked 2022-Mar-22 at 15:28

My objective is connect two different containers to get data, in other words:

I have an instance of OpenCTI working in my docker , and I can access it through my browser (http://localhost:8080).
Consequently, I am developing another one to get data from OpenCTI.

To connect both, I already created a docker network called "minharede".

However is not working.

The configuration of my containers is:

Docker-compose file of OpenCTI:

...

ANSWER

Answered 2022-Mar-21 at 19:04

The compose reference has this example:

Source https://stackoverflow.com/questions/71561336

QUESTION

How to convert the http get response from html to json format (from kaggle.com)

Asked 2022-Jan-10 at 09:37

I tried below code to get a http response from kaggle.com. Kaggle response is in html format and I wanted to convert it to json format for the ease of further processing.

...

ANSWER

Answered 2022-Jan-10 at 07:31

you can use html_to_json

Source https://stackoverflow.com/questions/70648631

QUESTION

Why does this code fail when an int is used but not when a double is used (possible compiler bug)?

Asked 2021-Sep-17 at 22:44

Given the following very simple program in GCC 7.3.1:

...

ANSWER

Answered 2021-Sep-17 at 22:25

The simplest fix is to change 1 to 1.0. That forces the computations to be done with doubles:

Source https://stackoverflow.com/questions/69229934

QUESTION

Cython not giving speedup

Asked 2021-Jul-31 at 12:14

I have been trying to test the speedup potential of using Cython as compared to the base Python code. For this purpose, I wrote two scripts 'linearAdvec_mat.py' and 'linearAdvec_mat.pyx' as follows:

linearAdvec_mat.py:

...

ANSWER

Answered 2021-Jul-31 at 12:14

Cython solution:

Let's time your python function as benchmark reference:

Source https://stackoverflow.com/questions/68594551

QUESTION

Cant move the menus in the header upwards to align with the logo

Asked 2021-Jul-20 at 14:06

Header with logo

i want to align home, etc with the logo, but i think the logo is occupying all the space on top of the menu-headers and i dont know how to reduce it, i've already tried the margin-left or right and also padding but it doesnt help. i also want to know if it is a bad practice to have negative CSS rules or if there is any bad practices in my code so far. sorry for the bad english, i`m not a native

...

ANSWER

Answered 2021-Jul-20 at 13:55

Give the logo a width of x px. That will give it a set size. You can do width=100% and make sure you style the container div as a inline-block or use flex-box in order to set its size straight.

Source https://stackoverflow.com/questions/68456011

QUESTION

How to convert STIX objects to Pydantic models?

Asked 2021-Jun-11 at 08:46

I'm using FastAPI and I need to represent different STIX 2 objects (from MITRE ATT&CK) with a corresponding/equivalent Pydantic model in order to return them as a response JSON.

Let's consider the AttackPattern object.

...

ANSWER

Answered 2021-Jun-11 at 08:46

A possible and promising approach is to generate the Pydantic model starting from the corresponding JSON Schema of the STIX object.

Luckily enough the JSON schemas for all the STIX 2 objects have been defined by the OASIS Open organization on the GitHub repository CTI-STIX2-JSON-Schemas.

In particular, the JSON Schema for the Attack-Pattern is available here.

Source https://stackoverflow.com/questions/67919795

QUESTION

Extraneous space between characters/glyphs in groff eqn

Asked 2021-May-29 at 08:28

I am running ubuntu 16.04 (it is on an OLD laptop). I am using 'pic | eqn -Tpdf -d@@ | groff -mm -Tpdf' software as per the ubuntu release. I need some symbols which are not in the standard groff TIMES font for the release. I have found the symbols I need in STIX and FreeMono that come with the ubuntu release. I have created the relevant font files for groff as per https://www.schaffter.ca/mom/momdoc/appendices.html.

It is almost working but there is extraneous spacing between characters / glyphs. See attached image. I have tried both STIX and FreeMono and they produce the same problem.

PDF output from groff eqn showing extraneous spacing

The groff, eqn mark up for the imaged example above is:

...

ANSWER

Answered 2021-May-29 at 07:19

As per comments per meuh. Might need to go to different software, ie, LaTeX.

Source https://stackoverflow.com/questions/67671660

QUESTION

How can I hide a line behind marker?

Asked 2021-May-19 at 11:09

I want to draw a graph for my school report.

As I should use a marker that has a small dot at center of it, I can't use the default filled circle marker. So I referred to the STIX font table and found that U+2299 satisfies the requirement. However, when I executed the code below, I got a figure in which the line penetrates the plot. How can I hide the line behind these markers so that it won't overlap with them? Any advice would be much appreciated.

...

ANSWER

Answered 2021-May-19 at 11:09

If I got you right you are looking for something like this:

Source https://stackoverflow.com/questions/67601740

QUESTION

React Mathjax2 does not work on React version 17

Asked 2021-May-04 at 05:23

I previously run recat-matcjax2 on react 16. It worked fine. But when update the react version 16 to 17 it does not work perfectly.

I am getting a couple of error.

These are two error files.

Trying to implement :

...

ANSWER

Answered 2021-May-04 at 05:23

react-mathjax2 hasn't been updated in 3 years.

You can try a new library that I have written called better-react-mathjax that is meant to be used with up-to-date React 17. You can use both MathJax version 2 and 3 with it.

Here's an example with better-react-mathjax that accomplishes what you want with MathJax version 2:

Source https://stackoverflow.com/questions/67371521

QUESTION

Matplotlib version of latex command "\ell" looking extra-slanted

Asked 2021-Apr-16 at 21:54

I use latex in matplotlib by setting

...

ANSWER

Answered 2021-Apr-16 at 21:16

The reason is the font you are using in matplotlib. With the following settings, for example, you get the same letter as in overleaf:

Source https://stackoverflow.com/questions/67131897

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install stix

You can download it from GitHub.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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