tectonic | contained TeX/LaTeX engine | Math library
kandi X-RAY | tectonic Summary
kandi X-RAY | tectonic Summary
Tectonic is a modernized, complete, self-contained TeX/LaTeX engine, powered by XeTeX and TeXLive.
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QUESTION
I am having a hard time understanding why my phylo tree (imported as a phyloseq object from QIIME2) appears to have no branch lengths when used in phylosig()
. I am trying to compute the phylogenetic signal of my 16S dataset compared to a single continuous metadata variable. All example datasets are included at the bottom of this question.
ANSWER
Answered 2022-Jan-25 at 12:24The problem is not the lack of branch lengths in the tree. What the error message is saying is that the tree does not have the tips that correspond to the names of values in the trait variable. glacialpath
must be a named vector and the names must be present in the phylogeny.
In general, a good practice is to check for possible problems in these three areas.
phylo
is not a correctphylo
format.phylo
should contain tips with names corresponding to those in themetadata
.- Related to #2,
glacialpath
lacks names.
phylo
is not a correct phylo
format
phytools::phylosig
requires that the tree is in correct phylo
format. Try to explore the tree with str(phylo)
, and see whether all values in phylo$edge.length
are numeric and there are no missing values.
phylo
should contain tips with names corresponding to those in the metadata
What are the samples the phylogenetic signal should be calculated for? Assuming that the column sample
in the metadata
contains names, reduce the tree to the size of the available data:
QUESTION
I'm trying to create a COBOL program using OpenCobol that has an external module when it does a calculation and then brings the result back into the main program using CALL. But everytime I try to run the program it says it can't find the module. I have already changed my module to Program Type "Module" from executable and I have added the module path as a Library path but nothing is working so far
Here is my main program code:
...ANSWER
Answered 2021-Aug-17 at 19:15I am not a user of OpenCobol, but, according to their manual in section 7, there are many ways to accomplish what you want.
But the simplest would be to statically compile and link the main and sub programs in one command line:
QUESTION
I have a conda environment where I have packages including bcftools installed. I am using bcftools stats to generate some stats on my VCF files. Then, I want to plot the generated stats using plot-vcfstats, also from bcftools. However, this command turned out to be dependent on certain packages that didn't install when I installed bcftools in my conda env. The output I got when running plot-vcfstats
:
ANSWER
Answered 2021-Oct-22 at 04:24Seems like a mess. Some of the comments in this open issue imply that Conda's texlive-core
is broken, but not really clear there is an authoritative response there.
On osx-64 platform, I can get semi-functionality with the environment:
QUESTION
I'm attempting to implment a Map
on a SwiftUI view from a view model. Every example I find online hard codes a coordinate. In my case, I'm initializing a view model with a Codable
struct and I have no idea what the coordinate is going to be.
I do not encounter compiler issues when I build the project, but canvas crashes. I've tried closing Xcode, cleaning derived data, etc., but that doesn't seem to resolve it.
Any suggestions re: where my mistake is are greatly appreciated.
...ANSWER
Answered 2021-Apr-08 at 06:25If you run this on the simulator rather than the preview, you get a more helpful error:
QUESTION
i have been trying to use For Loop in kotlin to ilterate through this JsonObject but i keep getting this error, can anyone help this is the whole kotlin class and the dummy json response i want to use. PS "i am a beginner"
...ANSWER
Answered 2020-Sep-14 at 07:14 //traverse the arrays
for (item in 0 until earthQuakeJsonArray.length()){
val currentQuake = earthQuakeJsonArray.getJSONObject(item)
val properties = currentQuake.getJSONObject("properties")
val magnitude = properties.getString("mag")
val location = properties.getString("place")
val time = properties.getString("time")
val earthquake = Content(magnitude,location,time)
earthquakes.add(earthquake)
}
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