NECAT | Nanopore data assembler | Genomics library

by xiaochuanle C Version: v0.0.1_update20200803 License: No License

X-Ray Key Features Code Snippets(3)Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | NECAT Summary

NECAT is a C library typically used in Artificial Intelligence, Genomics applications. NECAT has no bugs, it has no vulnerabilities and it has low support. You can download it from GitHub.

NECAT is an error correction and de-novo assembly tool for Nanopore long noisy reads. If you are interested in calling Structural Variants from Nanopore reads, you are welcome to have a try our necatsv.

Support

Quality

Security

License

Reuse

Support

NECAT has a low active ecosystem.

It has 113 star(s) with 21 fork(s). There are 9 watchers for this library.

It had no major release in the last 12 months.

There are 35 open issues and 8 have been closed. On average issues are closed in 89 days. There are 4 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of NECAT is v0.0.1_update20200803

Quality

NECAT has 0 bugs and 0 code smells.

Security

NECAT has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

NECAT code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

NECAT does not have a standard license declared.

Check the repository for any license declaration and review the terms closely.

Without a license, all rights are reserved, and you cannot use the library in your applications.

Reuse

NECAT releases are available to install and integrate.

Installation instructions, examples and code snippets are available.

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NECAT Key Features

No Key Features are available at this moment for NECAT.

NECAT Examples and Code Snippets

Step 1: Create a config file

Lines of Code : 36

License : No License

Copy

$ necat.pl config ecoli_config.txt

PROJECT=
ONT_READ_LIST=
GENOME_SIZE=
THREADS=4
MIN_READ_LENGTH=3000
PREP_OUTPUT_COVERAGE=40
OVLP_FAST_OPTIONS=-n 500 -z 20 -b 2000 -e 0.5 -j 0 -u 1 -a 1000
OVLP_SENSITIVE_OPTIONS=-n 500 -z 10 -e 0.5 -j 0 -u 1 -a 10

Build from source codes

Lines of Code : 6

License : No License

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$ git clone https://github.com/xiaochuanle/NECAT.git
$ cd NECAT/src/
$ make
$ cd ../Linux-amd64/bin
$ export PATH=$PATH:$(pwd)

export PATH=$PATH:$(pwd)

Install from executable binaries

Lines of Code : 4

License : No License

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$ wget https://github.com/xiaochuanle/NECAT/releases/download/v0.0.1_update20200803/necat_20200803_Linux-amd64.tar.gz
$ tar xzvf necat_20200803_Linux-amd64.tar.gz
$ cd NECAT/Linux-amd64/bin
$ export PATH=$PATH:$(pwd)

Community Discussions

Trending Discussions on NECAT

Webscraping a list of items

QUESTION

Webscraping a list of items

Asked 2021-Dec-21 at 04:16

This is my first time programming in rust (I'm currently reading the book) and I recently had a need to scrap a list of diseases and conditions for this site, after trying out several guides, I ended up with this small snippet. I'm currently stuck iterating through a ol, where instead of taking each li as an item in the array, it's being taken as a single element.

...

ANSWER

Answered 2021-Dec-21 at 02:03

find() returns a list of the elements matching the creteria. You need to call .children() to get the

Source https://stackoverflow.com/questions/70429627

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install NECAT

We have sucessfully tested NECAT on. If you meet problems in running NECAT like. Please update your perl to a newer version (such as v5.26). There are two ways to install NECAT.
Ubuntu 16.04 (GCC 5.4.0, Perl v5.22.1)
CentOS 7.3.1611 (GCC 4.8.5, Perl v5.26.2)
After installation, all the executable files can be found in NECAT/Linux-amd64/bin. The command line. above is used for adding NECAT/Linux-amd64/bin to the system PATH.