Bismark | map bisulfite converted sequence reads and determine | Genomics library

by FelixKrueger HTML Version: 0.24.1 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions(7)Vulnerabilities Install Support

kandi X-RAY | Bismark Summary

Bismark is a HTML library typically used in Artificial Intelligence, Genomics applications. Bismark has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away. It's main features are:.

Support

Quality

Security

License

Reuse

Support

Bismark has a low active ecosystem.

It has 318 star(s) with 98 fork(s). There are 17 watchers for this library.

It had no major release in the last 12 months.

There are 3 open issues and 527 have been closed. On average issues are closed in 142 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of Bismark is 0.24.1

Quality

Bismark has no bugs reported.

Security

Bismark has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

Bismark is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

Bismark releases are available to install and integrate.

Installation instructions are available. Examples and code snippets are not available.

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Bismark Key Features

No Key Features are available at this moment for Bismark.

Bismark Examples and Code Snippets

No Code Snippets are available at this moment for Bismark.

Community Discussions

Trending Discussions on Bismark

Set Plotly Bar Color Based on 3rd Column Value in Python

Basic R: move y-Axis for barplot

mysql update with condition: fails

mysql: natural join

If i load php file with AJAX, content of my function return [object HTMLDivElement]

Kotlin Android Jetpack Navigation between Fragments in backstack

Writing a regular expression that will select a string

QUESTION

Set Plotly Bar Color Based on 3rd Column Value in Python

Asked 2021-Apr-10 at 14:55

I've got the following dataframe called data:

...

ANSWER

Answered 2021-Apr-10 at 14:55

You can use marker_color instead marker. Here's an example:

Source https://stackoverflow.com/questions/66603518

QUESTION

Basic R: move y-Axis for barplot

Asked 2021-Jan-27 at 18:56

is there a way to move the y-Axis to the right, so that the gap between the y-Axis and the first bar is 0?

So far i've tried the axis() command to make a new y-Axis. But i always get the same one shown above.

Here is a sample of the dataset:

...

ANSWER

Answered 2021-Jan-27 at 18:56

Use axes as false and set them to pos zero

Source https://stackoverflow.com/questions/65925115

QUESTION

mysql update with condition: fails

Asked 2020-May-03 at 15:07

I'm currently trying to make a simple table with MySQL that satisfies the below condition.

update the result from Outcomes data to 'sunk' if the ship was built-in 'Japan'

I've tried several codes but they all failed.

Here's the code I've been trying

...

ANSWER

Answered 2020-May-03 at 15:07

You could try a joined update:

Source https://stackoverflow.com/questions/61576188

QUESTION

mysql: natural join

Asked 2020-May-02 at 09:10

everyone! I'm currently trying to make a simple table with MySQL that satisfies the below condition.

make a table of ship names, displacement, and numGuns with ones participated 'Guadalcanal' battle

3 tables are needed to make this.

I've tried several codes but they all failed.

I also wonder if I can use 'natural join' redundantly.

Here's the code I've been trying

...

ANSWER

Answered 2020-May-02 at 09:10

I think this will help you:

Source https://stackoverflow.com/questions/61555627

QUESTION

If i load php file with AJAX, content of my function return [object HTMLDivElement]

Asked 2019-Nov-12 at 23:54

Heeelo,

If i load php file with AJAX, content of my function return [object HTMLDivElement], but if I load my function without load php file, is view normal.

index.php

...

ANSWER

Answered 2019-Nov-10 at 15:09

You never define content inside the function where you use document.getElementById("myDiv").innerHTML = content; so the JS engine looks up the scope until it finds a match. That match is the global variable that is implicitly created by the existence of

so content is an HTML element object and not a string.

Since it is an object, it gets converted to a string by way of the element's toString() method which, by default, will return the string "[object HTMLDivElement]".

If you want some other value, then you'll need to define it somewhere.

Note that elsewhere you define a content variable with let but that is in the scope of a different function. That function is asynchronous so for further reading you should probably also see How do I return the response from an asynchronous call?

Source https://stackoverflow.com/questions/58789764

QUESTION

Kotlin Android Jetpack Navigation between Fragments in backstack

Asked 2018-Dec-19 at 05:58

I have a small app. 1 Activity (MainActivity.kt) and two Fragments (MainFragment & CreateNewJobFragment).

Mainfragment has a Recyclerview. CreateNewJobFragment contains a 6 spinners and an edittext. I'm attempting to have the selections from the spinners and edittext to populate the RecyclerView when the user makes their choices and clicks a "create job" button.

The issue is, when this button is clicked, the app will go back up the backstack to the MainFragment, but instead of populating the recyclerview with a new item, it runs through onCreate again and nothing happens.

MainFragment.kt

...

ANSWER

Answered 2018-Dec-19 at 05:58

Late responding to this.

I was able to get this figured out. By using Sugar ORM database. Calling it in onResume() in my MainFragment.

It was a dumb question that I should have researched more before posting.

Source https://stackoverflow.com/questions/53671645

QUESTION

Writing a regular expression that will select a string

Asked 2017-Mar-02 at 01:22

I have a .txt that contains names of cakes (below * Exported from... ) and where is it exported from. I'm doing a UI in WPF/C# and I have a textbox where you can enter a string and click the "search" button. I want to write a regular expresion that will only look for that string in the whole name of the cake and display all the names of cakes with that string. I don't see a pattern with those names.

For example:

Input --> In the textbox I enter: Strawberry

Output --> Strawberry Shortcake , Eva's Strawberry Cake

Here is my .txt file:

...

ANSWER

Answered 2017-Mar-02 at 01:20

You need a regex for that simple scenario.

Assuming your list of cakes is stored in a List, all you need to do then is something like this

Source https://stackoverflow.com/questions/42545138

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install Bismark

Bismark is written in Perl and is executed from the command line. To install Bismark simply download the latest release of the code from the Releases page and extract the files into a Bismark installation folder.
Bowtie2 or HISAT2
Samtools

Support

The Bismark documentation can be found with the code in the Docs subfolder and also read online. There is also an overview of the alignment modes that are currently supported by Bismark: Bismark alignment modes (pdf).

Find more information at: