hapi-fhir | docker image is probably your fastest and simplest way | Continuous Deployment library
kandi X-RAY | hapi-fhir Summary
kandi X-RAY | hapi-fhir Summary
This docker image is probably your fastest and simplest way to get your own implementation of FHIR server and client running in 10 minutes or less.
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QUESTION
I'd like to color output text.
I mean, I'm getting logs:
...ANSWER
Answered 2021-May-27 at 14:16In terminals text can be colored using ANSI codes. You just have to insert them before and after [...]
:
QUESTION
I am currently working on a Hapi-FHIR project.
There I want to implement a collection of Questionnar Responses by Patient. The collection gives back all QuestionnaireResponses of a Patient with a given PatientId.
This works without problems but I also want to adhere to the REST Resource Naming Conventions.
So the search URL for my Collection shoud look something like
https://example.com/patient/{id}/questionnaireresponses
.
Right now my search URL looks like this:
https://example.com/QuestionnaireResponse?patient={id}
I already tried to set my own search Url with @Path("/patient/{id}/questionnaireresponses")
but HAPI-FHIR seems to ignore this.
I searched the HAPI-FHIR documentation already but I did not find anything related.
My question is where does the naming of the search urls happen in HAPI-FHIR and how can I change the name of a search url?
...ANSWER
Answered 2021-Mar-05 at 15:03While I also find the FHIR naming and syntax choices a bit annoying, they're an integral part of the FHIR specification, not specific to Hapi. If you change them, your server won't be usable by a client that is expecting the standardized FHIR API. Which kind of defeats the point of using FHIR, no?
It might well be trivial to change the resource name in a Hapi server request (Patient to patient or patients), but since it doesn't really make that much sense, it might not be. So technically you might be forced to prehandle requests to support even that part of your syntax.
For the kind of hierarchical interrogation that you want, (patient/{id}/questionnaireresponses), things are more complicated even pure semantically, because there might be more than one relationship between two resource types. Even for your example, would patient/{id}/questionnaireresponses return just the responses where the patient is the subject, or also those where he is only the author? And how would you retrieve just those he has authored? FHIR is designed to be as explicit as possible to avoid different interpretations that can lead to wrong information being sent.
QUESTION
i'm working on a Java project that works correctly in Eclipse. When i use another IDE, or when i try to compile it using maven, i have some compilation errors, all related to a specific import. In pom, i have:
...ANSWER
Answered 2021-Feb-05 at 08:51Solved! It was a trivial maven repository problem. For some reasons, this was a bug caused by a maven repository cache error. I deleted the repository folder (.m2/repository) and downloaded again dependencies... Very strange because the files were the same.
QUESTION
How do I add the below to an R4 Patient?
...ANSWER
Answered 2020-Nov-25 at 02:24That extension isn't allowed on Patient. It's defined with a context of Bundle.entry.search. It's not a characteristic of the patient themselves, it's a characteristic of a particular entry in a search result based on a specific set of search criteria. The same Patient instance might well be a good result on one search and a poor result on a different search. So to add the extension, you'd have to add it on a 'search' object, not patient.
QUESTION
I am working on a jetty service, and when starting it, I get a lot of:
SomeClass scanned from multiple locations: jar: jar1!Someclass.class, jar2!Someclass.class
So a single class is provided by two jars, and which I get on runtime is undefined, which is not good. Looking at other issues I found that tattletale can help diagnosing the problem. The report, in the Multiple Jar files section lists the same classes as jetty upon startup and which jars they were in. A subset of the conflicts are:
And looking at
...ANSWER
Answered 2020-Oct-09 at 11:47Sounds like a bug in jscience
with how they packaged their jar, might want to file an issue with them.
They should either ...
- have a proper/focused jar and dependencies.
- or a standalone uber jar with no dependencies.
Not mixing the two concepts.
Meanwhile, just use the /
to exclude specific transitive dependencies that are causing you duplicate classes.
Also, you might want to run any of the various duplicate class/resource checker maven plugins to find any other cases you might have present on your project.
QUESTION
ANSWER
Answered 2020-Sep-08 at 15:54QUESTION
I'm looking for help on how to post a bundle containing multiple resources to a HAPI Server. I'm running the [test server][1], and I've tried using both the Jetty server and running it as a docker container. I'm able to successfully start the server, go to the UI and post a patient directly. And I can also post a patient directly from within Postman:
...ANSWER
Answered 2020-Jul-13 at 22:01To execute a transaction or a batch, POST it to the server's 'root' endpoint, not the Bundle endpoint - so .../hapi-fhir-jpaserver/fhir
, not .../hapi-fhir-jpaserver/fhir/Bundle
QUESTION
In the FHIR REST API, there are some standard parameters for all resources that can be used in the 'search' endpoints.
I need to use the '_profile' parameter on a search operation: https://www.hl7.org/fhir/search.html#profile
The HAPI FHIR documentation on implementing search operations (https://hapifhir.io/hapi-fhir/docs/server_plain/rest_operations_search.html) has a lot of examples, none mention the parameters that apply to all the resources, like '_profile'.
I also checked their test server online (http://hapi.fhir.org/resource?serverId=home_r4&pretty=true&resource=Observation) and I can't find a way to specify the '_profile' there, to see how it works.
At the code level, what I'm trying to do is this:
...ANSWER
Answered 2020-Jun-24 at 22:42The way to make the search work with the "_profile" parameters is this:
QUESTION
I added this artifact which is a war to my gradle project dependencies. I need to extend some classes, and use a modified servlet contexts from it.
I was expecting the war to be imported as is then I would use gradle tasks to manipulate to include the jars to dependencies, copy static resources to correct classpath etc. But gradle actually added a bunch of jars to dependency.
Im not sure if gradle scanned recursively all paths for jars and poms or probably just the jars under the WEB-INF/classes folder in the war. I can assume probably not the poms repositories as stated here.
Im I correct is assuming the jars in the WEB-INF/lib folder in the deflated war were not imported? its hard to tell as there are a lot of shared dependencies between my project and the war in question
Then whats the best way to declare a dependency on a war in the maven repo/jcenter if I need to extend and modify as I described at the top?
UPDATE:
I am now trying to use answer below and this solution https://discuss.gradle.org/t/how-to-add-an-artifactory-war-as-a-gradle-dependency/19804/2 , This only worked after moving the directory with the copied jars outside the buildDir my build.gradle
...ANSWER
Answered 2020-May-15 at 14:54By declaring a dependency on a WAR, Gradle will simply add it to the list of files for the matching configuration. So if you add a WAR in implementation
, it will simply be on the compileClasspath
and runtimeClasspath
without any processing.
So for sure Gradle will not transform your WAR dependency in a dependency on the JARs it contains.
If you want to use a WAR to copy and modify some of its content before repackaging it, you can use an isolated and custom configuration to resolve it from a remote repositories. Then you will define a Gradle task that will take the files of that configuration as the input and do the required processing on the WAR. Note that the task could also be the starting point of a series of tasks manipulating the WAR to one output, then that output to another one, etc ...
QUESTION
When I search with only birthData in fhir I am getting results.
For example: http://localhost:8080/hapi-fhir-jpaserver/fhir/Patient?_pretty=true&birthdate=2020-03-16
will return patient who has birthdate as 2020-03-16
.
When I am searching with _content
I am not getting any results. Something like this:
ANSWER
Answered 2020-Mar-18 at 21:58_content is for searching text content.
If you want to search for dates you need to use a date search parameter. E.g.:
http://localhost:8080/hapi-fhir-jpaserver/fhir/Patient?birthDate=2019-09-05
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