krait | ultrafast tool for genome-wide survey | Genomics library

 by   lmdu HTML Version: 1.3.3 License: AGPL-3.0

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kandi X-RAY | krait Summary

kandi X-RAY | krait Summary

krait is a HTML library typically used in Artificial Intelligence, Genomics applications. krait has no bugs, it has no vulnerabilities, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Krait is a robust and ultrafast tool with a user-friendly graphic interface for genome-wide investigation of microsatellites, which attempts to overcome the limitations of the currently available tools. Krait is written in Python and can be run as a standalone desktop application on Windows, Linux or Mac systems without dependencies. The microsatellite search engine is written in C and compiled as Python modules for import into Krait.
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            kandi-support Support

              krait has a low active ecosystem.
              It has 30 star(s) with 8 fork(s). There are 5 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 13 open issues and 9 have been closed. On average issues are closed in 12 days. There are 1 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of krait is 1.3.3

            kandi-Quality Quality

              krait has no bugs reported.

            kandi-Security Security

              krait has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

            kandi-License License

              krait is licensed under the AGPL-3.0 License. This license is Strong Copyleft.
              Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

            kandi-Reuse Reuse

              krait releases are available to install and integrate.
              Installation instructions are available. Examples and code snippets are not available.

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            Currently covering the most popular Java, JavaScript and Python libraries. See a Sample of krait
            Get all kandi verified functions for this library.

            krait Key Features

            No Key Features are available at this moment for krait.

            krait Examples and Code Snippets

            No Code Snippets are available at this moment for krait.

            Community Discussions

            Trending Discussions on krait

            The textView in RecyclerView in a Fragment, Doesn't Display Any Texts from Java or From XML Files
            Printing to logs the "conditon"
            Apply OnClickListener() to new Buttons in end scene
            Unknown pattern character X while running tone analyzer in Android
            Disable elements with an option using js

            QUESTION

            The textView in RecyclerView in a Fragment, Doesn't Display Any Texts from Java or From XML Files
            Asked 2018-Jun-04 at 07:24

            Edited my question Title I'm trying to pass JSON data into a RecyclerView that's built in a fragment, and I actually did it BEFORE I decorated the RecyclerView's list_items.xml.

            Now I'm trying to display some normal texts into this Recycler View, and the AS always give me a NullPointerException at the line of MyViewHolder...after I commented the line, the app runs but the RecyclerView doesn't display any texts even the texts in the RecyclerView's list_items.xml

            Here is the result I have so far, the recyclerView displayes ImageView ONLY. And the textView doesn't work.

            ...

            ANSWER

            Answered 2018-Jun-04 at 07:24

            @Kira :

            Please replace your list_items.xml file with below code and check again:

            Source https://stackoverflow.com/questions/50673834

            QUESTION

            Printing to logs the "conditon"
            Asked 2017-Jun-08 at 07:11

            NEWEST UPDATE

            ...

            ANSWER

            Answered 2017-Jun-07 at 08:59

            Log.d("website content", jsonObject.getString("condition").toString());

            Source https://stackoverflow.com/questions/44407968

            QUESTION

            Apply OnClickListener() to new Buttons in end scene
            Asked 2017-Jun-02 at 09:36

            My app starts with a single button. Pressing it causes this button to slide down and new buttons to slide in into the same activity. I want to set OnClickListeners to these new buttons so I can use them to launch new activities using intent. The problem is when I try to do so, the app crashes even before it starts.

            My app transitions from this :

            To this :

            MainActivity.java (Commented part is the code I am trying to apply to the buttons)

            ...

            ANSWER

            Answered 2017-Jun-01 at 17:34

            Try creating buttons dynamically, then add onClickListener to them and add them to the layout.

            Source https://stackoverflow.com/questions/44313669

            QUESTION

            Unknown pattern character X while running tone analyzer in Android
            Asked 2017-May-23 at 13:58

            I am new to Android and IBM Watson. I am building a simple app which analyzes the tone of input text. However, while running the application, I get the following error:

            05-23 15:14:04.808 25157-25157/? I/art: Late-enabling -Xcheck:jni

            05-23 15:14:04.949 25157-25157/com.abhishek.speechtotextapp W/art: Failed execv(/system/bin/dex2oat --runtime-arg -classpath --runtime-arg --debuggable --instruction-set=arm --instruction-set-features=smp,div,atomic_ldrd_strd --runtime-arg -Xrelocate --boot-image=/system/framework/boot.art --runtime-arg -Xms64m --runtime-arg -Xmx512m --instruction-set-variant=krait --instruction-set-features=default --dex-file=/data/app/com.abhishek.speechtotextapp-2/split_lib_dependencies_apk.apk --oat-file=/data/dalvik-cache/arm/data@app@com.abhishek.speechtotextapp-2@split_lib_dependencies_apk.apk@classes.dex) because non-0 exit status

            05-23 15:14:05.312 25157-25157/com.abhishek.speechtotextapp W/art: Failed execv(/system/bin/dex2oat --runtime-arg -classpath --runtime-arg --debuggable --instruction-set=arm --instruction-set-features=smp,div,atomic_ldrd_strd --runtime-arg -Xrelocate --boot-image=/system/framework/boot.art --runtime-arg -Xms64m --runtime-arg -Xmx512m --instruction-set-variant=krait --instruction-set-features=default --dex-file=/data/app/com.abhishek.speechtotextapp-2/split_lib_slice_0_apk.apk --oat-file=/data/dalvik-cache/arm/data@app@com.abhishek.speechtotextapp-2@split_lib_slice_0_apk.apk@classes.dex) because non-0 exit status

            05-23 15:14:05.350 25157-25157/com.abhishek.speechtotextapp W/art: Failed execv(/system/bin/dex2oat --runtime-arg -classpath --runtime-arg --debuggable --instruction-set=arm --instruction-set-features=smp,div,atomic_ldrd_strd --runtime-arg -Xrelocate --boot-image=/system/framework/boot.art --runtime-arg -Xms64m --runtime-arg -Xmx512m --instruction-set-variant=krait --instruction-set-features=default --dex-file=/data/app/com.abhishek.speechtotextapp-2/split_lib_slice_1_apk.apk --oat-file=/data/dalvik-cache/arm/data@app@com.abhishek.speechtotextapp-2@split_lib_slice_1_apk.apk@classes.dex) because non-0 exit status

            05-23 15:14:05.398 25157-25157/com.abhishek.speechtotextapp W/art: Failed execv(/system/bin/dex2oat --runtime-arg -classpath --runtime-arg --debuggable --instruction-set=arm --instruction-set-features=smp,div,atomic_ldrd_strd --runtime-arg -Xrelocate --boot-image=/system/framework/boot.art --runtime-arg -Xms64m --runtime-arg -Xmx512m --instruction-set-variant=krait --instruction-set-features=default --dex-file=/data/app/com.abhishek.speechtotextapp-2/split_lib_slice_2_apk.apk --oat-file=/data/dalvik-cache/arm/data@app@com.abhishek.speechtotextapp-2@split_lib_slice_2_apk.apk@classes.dex) because non-0 exit status

            05-23 15:14:05.445 25157-25157/com.abhishek.speechtotextapp W/art: Failed execv(/system/bin/dex2oat --runtime-arg -classpath --runtime-arg --debuggable --instruction-set=arm --instruction-set-features=smp,div,atomic_ldrd_strd --runtime-arg -Xrelocate --boot-image=/system/framework/boot.art --runtime-arg -Xms64m --runtime-arg -Xmx512m --instruction-set-variant=krait --instruction-set-features=default --dex-file=/data/app/com.abhishek.speechtotextapp-2/split_lib_slice_3_apk.apk --oat-file=/data/dalvik-cache/arm/data@app@com.abhishek.speechtotextapp-2@split_lib_slice_3_apk.apk@classes.dex) because non-0 exit status

            05-23 15:14:05.492 25157-25157/com.abhishek.speechtotextapp W/art: Failed execv(/system/bin/dex2oat --runtime-arg -classpath --runtime-arg --debuggable --instruction-set=arm --instruction-set-features=smp,div,atomic_ldrd_strd --runtime-arg -Xrelocate --boot-image=/system/framework/boot.art --runtime-arg -Xms64m --runtime-arg -Xmx512m --instruction-set-variant=krait --instruction-set-features=default --dex-file=/data/app/com.abhishek.speechtotextapp-2/split_lib_slice_4_apk.apk --oat-file=/data/dalvik-cache/arm/data@app@com.abhishek.speechtotextapp-2@split_lib_slice_4_apk.apk@classes.dex) because non-0 exit status

            05-23 15:14:05.535 25157-25157/com.abhishek.speechtotextapp W/art: Failed execv(/system/bin/dex2oat --runtime-arg -classpath --runtime-arg --debuggable --instruction-set=arm --instruction-set-features=smp,div,atomic_ldrd_strd --runtime-arg -Xrelocate --boot-image=/system/framework/boot.art --runtime-arg -Xms64m --runtime-arg -Xmx512m --instruction-set-variant=krait --instruction-set-features=default --dex-file=/data/app/com.abhishek.speechtotextapp-2/split_lib_slice_5_apk.apk --oat-file=/data/dalvik-cache/arm/data@app@com.abhishek.speechtotextapp-2@split_lib_slice_5_apk.apk@classes.dex) because non-0 exit status

            05-23 15:14:05.588 25157-25157/com.abhishek.speechtotextapp W/art: Failed execv(/system/bin/dex2oat --runtime-arg -classpath --runtime-arg --debuggable --instruction-set=arm --instruction-set-features=smp,div,atomic_ldrd_strd --runtime-arg -Xrelocate --boot-image=/system/framework/boot.art --runtime-arg -Xms64m --runtime-arg -Xmx512m --instruction-set-variant=krait --instruction-set-features=default --dex-file=/data/app/com.abhishek.speechtotextapp-2/split_lib_slice_6_apk.apk --oat-file=/data/dalvik-cache/arm/data@app@com.abhishek.speechtotextapp-2@split_lib_slice_6_apk.apk@classes.dex) because non-0 exit status

            05-23 15:14:05.632 25157-25157/com.abhishek.speechtotextapp W/art: Failed execv(/system/bin/dex2oat --runtime-arg -classpath --runtime-arg --debuggable --instruction-set=arm --instruction-set-features=smp,div,atomic_ldrd_strd --runtime-arg -Xrelocate --boot-image=/system/framework/boot.art --runtime-arg -Xms64m --runtime-arg -Xmx512m --instruction-set-variant=krait --instruction-set-features=default --dex-file=/data/app/com.abhishek.speechtotextapp-2/split_lib_slice_7_apk.apk --oat-file=/data/dalvik-cache/arm/data@app@com.abhishek.speechtotextapp-2@split_lib_slice_7_apk.apk@classes.dex) because non-0 exit status

            05-23 15:14:05.682 25157-25157/com.abhishek.speechtotextapp W/art: Failed execv(/system/bin/dex2oat --runtime-arg -classpath --runtime-arg --debuggable --instruction-set=arm --instruction-set-features=smp,div,atomic_ldrd_strd --runtime-arg -Xrelocate --boot-image=/system/framework/boot.art --runtime-arg -Xms64m --runtime-arg -Xmx512m --instruction-set-variant=krait --instruction-set-features=default --dex-file=/data/app/com.abhishek.speechtotextapp-2/split_lib_slice_8_apk.apk --oat-file=/data/dalvik-cache/arm/data@app@com.abhishek.speechtotextapp-2@split_lib_slice_8_apk.apk@classes.dex) because non-0 exit status

            05-23 15:14:05.721 25157-25157/com.abhishek.speechtotextapp W/art: Failed execv(/system/bin/dex2oat --runtime-arg -classpath --runtime-arg --debuggable --instruction-set=arm --instruction-set-features=smp,div,atomic_ldrd_strd --runtime-arg -Xrelocate --boot-image=/system/framework/boot.art --runtime-arg -Xms64m --runtime-arg -Xmx512m --instruction-set-variant=krait --instruction-set-features=default --dex-file=/data/app/com.abhishek.speechtotextapp-2/split_lib_slice_9_apk.apk --oat-file=/data/dalvik-cache/arm/data@app@com.abhishek.speechtotextapp-2@split_lib_slice_9_apk.apk@classes.dex) because non-0 exit status

            05-23 15:14:05.722 25157-25157/com.abhishek.speechtotextapp W/System: ClassLoader referenced unknown path: /data/app/com.abhishek.speechtotextapp-2/lib/arm

            05-23 15:14:05.727 25157-25157/com.abhishek.speechtotextapp I/InstantRun: starting instant run server: is main process

            05-23 15:14:05.757 25157-25157/com.abhishek.speechtotextapp I/CredentialUtils: JNDI string lookups is not available.

            05-23 15:14:05.890 25157-25331/com.abhishek.speechtotextapp D/OpenGLRenderer: Use EGL_SWAP_BEHAVIOR_PRESERVED: true

            ? 05-23 15:14:05.932 25157-25331/com.abhishek.speechtotextapp I/Adreno-EGL: : EGL 1.4 QUALCOMM build: Nondeterministic_AU_msm8974_LA.BF.1.1.3_RB1__release_AU (Ia6c73e7530) OpenGL ES Shader Compiler Version: E031.29.00.00 Build Date: 12/04/15 Fri Local Branch: mybranch17080070 Remote Branch: quic/LA.BF.1.1.3_rb1.5 Local Patches: NONE Reconstruct Branch: NOTHING

            05-23 15:14:05.933 25157-25331/com.abhishek.speechtotextapp I/OpenGLRenderer: Initialized EGL, version 1.4

            05-23 15:14:14.628 25157-25881/com.abhishek.speechtotextapp W/art: Verification of void okhttp3.HttpUrl.canonicalize(okio.Buffer, java.lang.String, int, int, java.lang.String, boolean, boolean, boolean, boolean) took 114.407ms

            05-23 15:14:16.233 25157-25881/com.abhishek.speechtotextapp D/OkHttp: --> POST https://gateway.watsonplatform.net/tone-analyzer/api/v3/tone?version=2016-05-19 http/1.1 (16-byte body)

            05-23 15:14:16.942 25157-25881/com.abhishek.speechtotextapp D/OkHttp: <-- 200 OK https://gateway.watsonplatform.net/tone-analyzer/api/v3/tone?version=2016-05-19 (708ms, unknown-length body)

            Stack Trace:

            05-23 16:25:46.706 14754-15374/com.abhishek.toneanalyzertest W/System.err: java.lang.IllegalArgumentException: Unknown pattern character 'X'

            05-23 16:25:46.706 14754-15374/com.abhishek.toneanalyzertest W/System.err: at java.text.SimpleDateFormat.validatePatternCharacter(SimpleDateFormat.java:323)

            05-23 16:25:46.706 14754-15374/com.abhishek.toneanalyzertest W/System.err: at java.text.SimpleDateFormat.validatePattern(SimpleDateFormat.java:312)

            05-23 16:25:46.706 14754-15374/com.abhishek.toneanalyzertest W/System.err: at java.text.SimpleDateFormat.(SimpleDateFormat.java:365)

            05-23 16:25:46.706 14754-15374/com.abhishek.toneanalyzertest W/System.err: at java.text.SimpleDateFormat.(SimpleDateFormat.java:258)

            05-23 16:25:46.707 14754-15374/com.abhishek.toneanalyzertest W/System.err: at com.ibm.watson.developer_cloud.util.DateDeserializer.(DateDeserializer.java:52)

            05-23 16:25:46.707 14754-15374/com.abhishek.toneanalyzertest W/System.err: at com.ibm.watson.developer_cloud.util.GsonSingleton.registerTypeAdapters(GsonSingleton.java:53)

            05-23 16:25:46.707 14754-15374/com.abhishek.toneanalyzertest W/System.err: at com.ibm.watson.developer_cloud.util.GsonSingleton.createGson(GsonSingleton.java:42)

            05-23 16:25:46.707 14754-15374/com.abhishek.toneanalyzertest W/System.err: at com.ibm.watson.developer_cloud.util.GsonSingleton.getGsonWithoutPrettyPrinting(GsonSingleton.java:76)

            05-23 16:25:46.707 14754-15374/com.abhishek.toneanalyzertest W/System.err: at com.ibm.watson.developer_cloud.util.ResponseUtils.getObject(ResponseUtils.java:93)

            05-23 16:25:46.707 14754-15374/com.abhishek.toneanalyzertest W/System.err: at com.ibm.watson.developer_cloud.util.ResponseConverterUtils$3.convert(ResponseConverterUtils.java:79)

            05-23 16:25:46.707 14754-15374/com.abhishek.toneanalyzertest W/System.err: at com.ibm.watson.developer_cloud.util.ResponseConverterUtils$3.convert(ResponseConverterUtils.java:76)

            05-23 16:25:46.707 14754-15374/com.abhishek.toneanalyzertest W/System.err: at com.ibm.watson.developer_cloud.service.WatsonService.processServiceCall(WatsonService.java:479)

            05-23 16:25:46.707 14754-15374/com.abhishek.toneanalyzertest W/System.err: at com.ibm.watson.developer_cloud.service.WatsonService$2.execute(WatsonService.java:254)

            05-23 16:25:46.707 14754-15374/com.abhishek.toneanalyzertest W/System.err: at com.abhishek.toneanalyzertest.MainActivity$MyThread.run(MainActivity.java:128)

            05-23 16:25:46.711 14754-14754/com.abhishek.toneanalyzertest D/AndroidRuntime: Shutting down VM

            05-23 16:25:46.713 14754-14754/com.abhishek.toneanalyzertest E/AndroidRuntime: FATAL EXCEPTION: main Process: com.abhishek.toneanalyzertest, PID: 14754 Theme: themes:{default=overlay:system, iconPack:system, fontPkg:system, com.android.systemui=overlay:system, com.android.systemui.navbar=overlay:system} java.lang.RuntimeException: Failure delivering result ResultInfo{who=null, request=1, result=-1, data=Intent { (has extras) }} to activity {com.abhishek.toneanalyzertest/com.abhishek.toneanalyzertest.MainActivity}: java.lang.NullPointerException: Attempt to invoke virtual method 'java.lang.String com.ibm.watson.developer_cloud.tone_analyzer.v3.model.ToneAnalysis.toString()' on a null object reference at android.app.ActivityThread.deliverResults(ActivityThread.java:3733) at android.app.ActivityThread.handleSendResult(ActivityThread.java:3776) at android.app.ActivityThread.-wrap16(ActivityThread.java) at android.app.ActivityThread$H.handleMessage(ActivityThread.java:1412) at android.os.Handler.dispatchMessage(Handler.java:102) at android.os.Looper.loop(Looper.java:148) at android.app.ActivityThread.main(ActivityThread.java:5461) at java.lang.reflect.Method.invoke(Native Method) at com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(ZygoteInit.java:726) at com.android.internal.os.ZygoteInit.main(ZygoteInit.java:616) Caused by: java.lang.NullPointerException: Attempt to invoke virtual method 'java.lang.String com.ibm.watson.developer_cloud.tone_analyzer.v3.model.ToneAnalysis.toString()' on a null object reference at com.abhishek.toneanalyzertest.MainActivity.onActivityResult(MainActivity.java:84) at android.app.Activity.dispatchActivityResult(Activity.java:6456) at android.app.ActivityThread.deliverResults(ActivityThread.java:3729) at android.app.ActivityThread.handleSendResult(ActivityThread.java:3776)  at android.app.ActivityThread.-wrap16(ActivityThread.java)  at android.app.ActivityThread$H.handleMessage(ActivityThread.java:1412)  at android.os.Handler.dispatchMessage(Handler.java:102)  at android.os.Looper.loop(Looper.java:148)  at android.app.ActivityThread.main(ActivityThread.java:5461)  at java.lang.reflect.Method.invoke(Native Method)  at com.android.internal.os.ZygoteInit$MethodAndArgsCaller.run(ZygoteInit.java:726)  at com.android.internal.os.ZygoteInit.main(ZygoteInit.java:616) 

            I have included the JAR files for Watson services and provided user permissions in the manifest file. As per the error above, I am getting a OK (200 coe) response from the API. Following is the code:

            ...

            ANSWER

            Answered 2017-May-23 at 13:58

            I would take a look at the following SO question:

            Unknown pattern character 'X' Exception occurs connecting to IBM Watson conversation API from Android

            It seems this is a known issue that has been fixed, but not released as of yet. A workaround of updating to a snapshot release was recommended while you wait for the fix to be released to Maven.

            Source https://stackoverflow.com/questions/44132271

            QUESTION

            Disable elements with an option using js
            Asked 2017-Apr-25 at 18:16

            Thanks for all answers, help. Unfortunately i have a new problem. I edited the script a little bit. Now i added 2 new values (named:64) to 2 new options. With these options, i want to disable the options classed -> "test". The code actually works, but now, when i added this new code, the previous code is not working. I think the problem is that i added 2 classes to 1 option, but i am not sure, and i dont know any other way to fix it. I know my troubles are really ridiculous, but i am new in js.

            ...

            ANSWER

            Answered 2017-Apr-24 at 16:01

            Try this:

            Source https://stackoverflow.com/questions/43592598

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install krait

            You can download it from GitHub.

            Support

            For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .
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            gh repo clone lmdu/krait

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