caleydo | Caleydo - Visualization for Molecular Biology | Genomics library

by Caleydo Java Version: v3.1.5 License: BSD-3-Clause

X-Ray Key Features Code Snippets Community Discussions(1)Vulnerabilities Install Support

kandi X-RAY | caleydo Summary

caleydo is a Java library typically used in Artificial Intelligence, Genomics applications. caleydo has no bugs, it has no vulnerabilities, it has build file available, it has a Permissive License and it has low support. You can download it from GitHub.

Caleydo is a visualization framework for molecular biology data. It is targeted at analyzing multiple heterogeneous but related tabular datasets (e.g., mRNA expression, copy number status and clinical variables), stratifications or clusters in these datasets and their relationships to biological pathways. For user documentation please refer to the [Caleydo Help] For general information and downloads based on binaries please use the [Caleydo Website] This guide assumes that you want to install Caleydo from source.

Support

Quality

Security

License

Reuse

Support

caleydo has a low active ecosystem.

It has 58 star(s) with 14 fork(s). There are 14 watchers for this library.

It had no major release in the last 12 months.

There are 0 open issues and 1884 have been closed. On average issues are closed in 1891 days. There are no pull requests.

It has a neutral sentiment in the developer community.

The latest version of caleydo is v3.1.5

Quality

caleydo has 0 bugs and 0 code smells.

Security

caleydo has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

caleydo code analysis shows 0 unresolved vulnerabilities.

There are 0 security hotspots that need review.

License

caleydo is licensed under the BSD-3-Clause License. This license is Permissive.

Permissive licenses have the least restrictions, and you can use them in most projects.

Reuse

caleydo releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions are available. Examples and code snippets are not available.

It has 190072 lines of code, 17801 functions and 2278 files.

It has medium code complexity. Code complexity directly impacts maintainability of the code.

Top functions reviewed by kandi - BETA

kandi has reviewed caleydo and discovered the below as its top functions. This is intended to give you an instant insight into caleydo implemented functionality, and help decide if they suit your requirements.

Create the layout .
Updates the perspective of the given event .
Handle the mouse events
Returns a list of ranked sets .
Renders the coordinate system
Creates the rows and columns .
Returns the log gamma value .
Render gene node .
Renders the stub for left and right offset .
Performs the affinity propagation transformation .

Get all kandi verified functions for this library.

caleydo Key Features

No Key Features are available at this moment for caleydo.

caleydo Examples and Code Snippets

No Code Snippets are available at this moment for caleydo.

Community Discussions

Trending Discussions on caleydo

neo4j : k-shortest path Built-In Algorithm support

QUESTION

neo4j : k-shortest path Built-In Algorithm support

Asked 2017-May-23 at 11:26

I need to find k-shortest paths between two nodes in neo4j.

Options tried till now:

I found Built-in Algorithm support for Djikstra,A* using shortestpath, allshortestpath calls as well as APOC procedures but none which suits my need.

All these give "one/many shortest path of lease weight/length of paths" and not best k shortest path
Giving Depth in the relation [:CONNECTED_TO*1..n] does not help either

I have gone through the question

Also found this plugin https://github.com/Caleydo/neo4j-kshortestpaths-plugin But cannot figure out how to use it. I am able to successfully add it to neo4j plugins

Any pointers welcome

...

ANSWER

Answered 2017-May-23 at 11:26

I am able to run this plugin https://github.com/Caleydo/neo4j-kshortestpaths-plugin and it gives the correct result as well.

How to Use:

Build the package using MVN against correct neo4j version that you are using. Update the POM file with the neo4j version before building
You need to pass node URI and not node/nodeID as parameter for source and target. (I was stuck here in this step)

Source https://stackoverflow.com/questions/44064851

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install caleydo

Caleydo uses Java, OpenGL and the Eclipse Rich Client Platform (RCP). Things you need to install before being able to run Caleydo:. To install Caleydo use EGit within Eclipse and clone the repository. Each directory in the caleydo-dev folder corresponds to an Eclipse project. [Here](http://www.vogella.com/articles/EGit/article.html) is a good tutorial on how to import Eclipse projects from git. If you want to use ssh (instead of https) for communicating with github out of eclipse follow [these](http://wiki.eclipse.org/EGit/User_Guide#Eclipse_SSH_Configuration) instructions. You will have to generate a new RSA key and save it to you ~/.ssh folder. Remeber to set a passphrase for you key. This will result in a file ida_rsa and ida_rsa.pub turning up in your ssh folder. Save your public rsa key with your eclipse account folder.
Eclipse Kepler for RCP and RAP Developers, which you can get from the [eclipse download page](http://www.eclipse.org/downloads/). Other Eclipse versions won’t work.
Install [EGit](http://www.eclipse.org/egit/download/) in Eclipse using software updates.
Java SDK >= 1.7

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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